Gene Tmel_1572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1572 
Symbol 
ID5296641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp1559744 
End bp1560700 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content35% 
IMG OID640769848 
Productelectron transport complex, RnfABCDGE type, D subunit 
Protein accessionYP_001306801 
Protein GI150021447 
COG category[C] Energy production and conversion 
COG ID[COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 
TIGRFAM ID[TIGR01946] electron transport complex, RnfABCDGE type, D subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.732649 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTAA TTACAGGTAA TGCACCACAT TTAAGGTCTA ATGATACAAC TGAAAAAGTT 
ATGATTGATG TTATTATTGC GCTTATACCT GCAATAATTG GTGCGTGGTA CTTCTTCGGA
GAATATGCCC TGTTTTTGAT TTTATTAGGA GCTTTTTCTG GTGAATTGTT TGAATTATTT
GTAATGAAAG TTTTGAGAAA GGATAAAAAT TTTGTTCCAA ATGGAAGTGC TGCTATAACG
GGGATTTTAC TTGCAATGAA TGTAAGTTCT GCAACACCTT GGTGGGTATT TTTAATTGGT
TTGGTTTTTG CTTTAGGTGT TGCAAAACAT GCATTTGGTG GATTGGGAAT GAATATTTTT
AATCCTGCAC TTGCAGGAAG GGCATTTTTA CTTGTATCAT TTCCCGTATC TATGACAACT
TGGTATAAAC CTGTATTTTC TTTTTCAAAG TGGGTTGATA TTCAAACAAT GGCAACCCCG
CTTGCTGTTT TAAAAGAAAC AGGAAGTGTT AATATAAGTT ATTGGGACTT GTTTATTGGT
AATCGTGGAG GCTCTTTAGG AGAAACCAGT GTATTGTTGC TTTTAATAGG TTTTGCTTAT
TTGGTTGTTA AAAAGAGAAT AAAGATTATG ATTCCAATTA CATATATTTC AACGGTTTTT
GTAATGTCAG GCATTTTTTA TCTTGTTAAT TCATCTTTTG GAAGTCCTCT TTTCCACATT
TTAAGTGGTG GTTTGATGCT CGGCGCTCTC TTTATGGCAA CTGATATGGT TACAAGCCCA
ATGACGGTTA AAGGGCAGAT AATTTTTGGA ATAGGCCTTG GTGTTATGAC TTTACTTATT
AGATATTTTG CAGGGTATCC CGAAGGAGTT TCTTTGTCTA TTCTTTTAAT GAATGCATTT
GTTCCTCTAA TTGACAGATA CACTGTGCCG AAGGTATTTG GTGAGGTGAA AGCATGA
 
Protein sequence
MKLITGNAPH LRSNDTTEKV MIDVIIALIP AIIGAWYFFG EYALFLILLG AFSGELFELF 
VMKVLRKDKN FVPNGSAAIT GILLAMNVSS ATPWWVFLIG LVFALGVAKH AFGGLGMNIF
NPALAGRAFL LVSFPVSMTT WYKPVFSFSK WVDIQTMATP LAVLKETGSV NISYWDLFIG
NRGGSLGETS VLLLLIGFAY LVVKKRIKIM IPITYISTVF VMSGIFYLVN SSFGSPLFHI
LSGGLMLGAL FMATDMVTSP MTVKGQIIFG IGLGVMTLLI RYFAGYPEGV SLSILLMNAF
VPLIDRYTVP KVFGEVKA