Gene Tmel_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1562 
Symbol 
ID5297015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand- 
Start bp1549419 
End bp1550099 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content30% 
IMG OID640769839 
Productdeoxyribonuclease V 
Protein accessionYP_001306792 
Protein GI150021438 
COG category[L] Replication, recombination and repair 
COG ID[COG1515] Deoxyinosine 3'endonuclease (endonuclease V) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATATA AAAAACTTCA TTCTTGGAAA TTAATACCTG AAAAAGCTAT AGAACTCCAA 
AAATTGTTAA GTAAAAAATT AACATTTAAA CCACTCAGCA AAGAAATAAA TTTGGTTGCA 
GGTGTAGATC TTTCATTTGT AAAAGATTAT GGTCTTGCAG TGATTGTAAT TTTAGATAAG 
AATATGGAAT TAATAAAAGT TTATCATCAC ATTGAAAAGA TAACGTTTCC TTACATTCCA 
GGATTGTTAG CATTTAGAGA AGGCCCCATA TTTTTAAAGG CATGGAAAAA GGTTAACCAC 
AATGTAGATG TAGTGTTTTT TGATGGACAT GGAATATCAC ATCCTAGAAG CATGGGAATT 
GCTTCTCACA TGGGGCTTTG GATAGAACAA CCCACAATAG GCATCGCCAA AAAAATTCTC 
TTTGGAAATT ACGTAGAACC GGAAAATAAA AAATTTTCGT TTACATATAT CACTTATAAA 
AACCAAAAAA TTGGTATTGT ATTAAGAAGT AGAGAAAATG TAAAACCTAT TTTTATCTCT 
CCTGGAAATC TTATAACCTT AGATGAATCA CTAGAATTAA CAAAACAATT CATTACAAAG 
TACAAATTGC CTGAACCAAC AAGACTAGCC CATAAATACT CTCAGCTCTT AAAGAAACAA 
TTCAATGAAG AATTACAATA A
 
Protein sequence
MEYKKLHSWK LIPEKAIELQ KLLSKKLTFK PLSKEINLVA GVDLSFVKDY GLAVIVILDK 
NMELIKVYHH IEKITFPYIP GLLAFREGPI FLKAWKKVNH NVDVVFFDGH GISHPRSMGI 
ASHMGLWIEQ PTIGIAKKIL FGNYVEPENK KFSFTYITYK NQKIGIVLRS RENVKPIFIS 
PGNLITLDES LELTKQFITK YKLPEPTRLA HKYSQLLKKQ FNEELQ