Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1276 |
Symbol | |
ID | 5296594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | + |
Start bp | 1284313 |
End bp | 1286004 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640769550 |
Product | type II secretion system protein E |
Protein accession | YP_001306510 |
Protein GI | 150021156 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTGAAA AGAGATATAA AAGATTGGGA GATATTTTAA TTGAAAAAGG AATAATTTCA AATGATGATC TTGAATATGC ATTGCAGATT CAAAAAAAGA CGAGAAAACC TATAGGAGAA GTTTTGGTGG AACTTGGTTT TTGTACTTGG AGTCAAATAA TTAAAGCTTT AGCTGAACAA TATGAAGTGC CATTTTTTGA AGAAAAGCCA AGGGTAGATC CTACGTTAAA TTTAAATATG AAAAGGGAAC TTATGGAAGA ACTTAGAGCA ATCCCAATAA GAATGGAAAA TGACAAGATA GTGGTTATTA CAGATAATGT ATACAATGTT TCATTGATAA AGAGAAGATT AAAATTTTTA TTTGGGAAAG ATATAGAGAT TTACCTTGTT GCTCCTGATA TATTTGAAGA AGTTATGATG GATGTTTCTT CTGAAAGAAC AGTAGAGTTT GAGGTTTCAG ATGTTCTAGT AGAAGAACAG GAAGAGCCCC AAGAAAACTT AGAGGAAATT GAGAATGAAG ATACGCCAAT TGTAAGATTG GTAAATAACT TGCTTACACA TGCTATAGAA CTTGATGCAA GTGATATACA CATTGAACCC AGGGAAAGAA AGAATGTTGT TGTAAGATAT AGAATTGATG GAGTTTTGAG AAAAATTACT GAATATCCGA AAAATAGTCA TAATTCAGTG GTTGCAAGAA TAAAGATATT ATCAAAATTG GATATTACGG AAAGAAGAAT ACCACAGGAC GGAAAGTTTT TTATGAATGT TAGAGGAGAG CAATATGATT TTAGGGTTTC TACTATGCCA TCTGTTAATG GGGAGAAAGT AGTAATGAGG ATTTTAAAAG TGTCACAATC CAATAAAAAA TTGGAGGAAT TGGGATATAG TAGTTATAAC TTTGAAAGAA TAAAAAGGTT AATTAGTCAT CCGTATGGAA TTATCTTGGT TACAGGACCT ACTGGTAGTG GAAAAAGTAC TACTTTAGTT GGGATAATTA ACTCTTTGAA TAATGAATCG GTAAATATTG TAACAGCGGA AGATCCAGTG GAATATACAA TAGAAGGCGT TACGCAATGT CAGGTAAATC CAGAGATTGG TTTAACTTTT GCAAAATATT TAAGGGCTTT TTTAAGGCAA GATCCTGATA TTATAATGGT TGGAGAAATT AGAGATAGAG AAACCGCTAA TTTGGCAGTT GAAGCATCTT TAACGGGGCA TTTGGTGTTA TCAACTCTTC ACACAAACAC AGCTGCGGGA GCAGTTGACA GATTGCTCAA TATGGGAGTT GATCCTAGTC TCATTAGTTC CTCATTAATT GGAGTTATAG GGCAGCGACT TGTAAGAAAA GTATGTAATA ATTGTGCAAA AGAGGTTGCG CTTGATCCAG AGTATGGAGC TTTTGCACAA AAAGTTTTTC CTGATATGCA ATTAAATCAA AAGATAGCAG TTGGTTGTGA TGCATGTAAT AATACGGGAT ATAAAGGAAG AACTGCTATA AATGAAGTGT TAATTGTCGA TGATGAATTA AGAACTTTAA TAAATAAAAG AGCATCACTT TCTGAAATAA CAAATGCTGC AAAAAAGGGT GGAATGAGAA CTTTGTTTGA AGATGGCCTT TACAAAGTTT TAAGTGGTGA AACTACCCTT GAGGAAGTAA TCAGAGTTAC AGGTGGGATG TATGAAGAAT AA
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Protein sequence | MLEKRYKRLG DILIEKGIIS NDDLEYALQI QKKTRKPIGE VLVELGFCTW SQIIKALAEQ YEVPFFEEKP RVDPTLNLNM KRELMEELRA IPIRMENDKI VVITDNVYNV SLIKRRLKFL FGKDIEIYLV APDIFEEVMM DVSSERTVEF EVSDVLVEEQ EEPQENLEEI ENEDTPIVRL VNNLLTHAIE LDASDIHIEP RERKNVVVRY RIDGVLRKIT EYPKNSHNSV VARIKILSKL DITERRIPQD GKFFMNVRGE QYDFRVSTMP SVNGEKVVMR ILKVSQSNKK LEELGYSSYN FERIKRLISH PYGIILVTGP TGSGKSTTLV GIINSLNNES VNIVTAEDPV EYTIEGVTQC QVNPEIGLTF AKYLRAFLRQ DPDIIMVGEI RDRETANLAV EASLTGHLVL STLHTNTAAG AVDRLLNMGV DPSLISSSLI GVIGQRLVRK VCNNCAKEVA LDPEYGAFAQ KVFPDMQLNQ KIAVGCDACN NTGYKGRTAI NEVLIVDDEL RTLINKRASL SEITNAAKKG GMRTLFEDGL YKVLSGETTL EEVIRVTGGM YEE
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