| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1240 |
|---|
| Symbol | |
|---|
| ID | 5296592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1252326 |
|---|
| End bp | 1252880 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640769516 |
|---|
| Product | phosphodiesterase |
|---|
| Protein accession | YP_001306478 |
|---|
| Protein GI | 150021124 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0622] Predicted phosphoesterase |
|---|
| TIGRFAM ID | [TIGR00040] phosphoesterase, MJ0936 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAATTT TAGTAATTTC TGATACACAC GGTTCATTGA AAAATTGGGA GAAGATTAAA
AATATAGTAG ATAGTGTAGA TGAAGTTTTT CATTTAGGAG ATATTTTATA CCATGGTCCT
AGAAATCCAT TACCGGATGG TTATGATCCA AAGAATTTGG CAGAGGAATT GAAGAAGACA
AATGTAAATT ACGTAAGGGG CAATTGTGAC GCAGATGTAG ATTTGAAAGT TTTAAATATA
CAAGAAATGC CAAAGCAGAT AATTGAGTAT TTTGGAAATT TGCCCGTTTA TTTTTTTCAT
GGAGAAGTTA TTGAAGATGA TGGATTTGAT TTAATAGCTT TTGCCAAAAA ACATGATGTA
AAAATAGTTT TACATGGACA TACACATATT CCAAAAATTG AGGAAATAGA AGGAGTTGTA
GTTGCAAATC CGGGAAGTCT TTCACTTCCT AAAAGGGGAT TTCCAAAGAC ATATATGATT
ATTGATATAG ATGATAAAGT TACACTTACA ATTTTTGATT TAGAGGGGAA AGAGGTGCTT
AAGAAGACCC TATGA
|
|---|
| Protein sequence | MRILVISDTH GSLKNWEKIK NIVDSVDEVF HLGDILYHGP RNPLPDGYDP KNLAEELKKT
NVNYVRGNCD ADVDLKVLNI QEMPKQIIEY FGNLPVYFFH GEVIEDDGFD LIAFAKKHDV
KIVLHGHTHI PKIEEIEGVV VANPGSLSLP KRGFPKTYMI IDIDDKVTLT IFDLEGKEVL
KKTL
|
|---|
| |