Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1039 |
Symbol | polC |
ID | 5297113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | + |
Start bp | 1065570 |
End bp | 1069658 |
Gene Length | 4089 bp |
Protein Length | 1362 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 640769323 |
Product | DNA polymerase III PolC |
Protein accession | YP_001306285 |
Protein GI | 150020931 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family [TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.195059 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATATG TTTTTGAGAA ATTAGCTTTT CCCGTTTCAA GGTTTTATGA GTATTTTAAT ATAGAAGTAT CTGGGGAAAT AACAAAGATT GTTTATGAAC CTTCTAACAG GGTTTTAACT TTCCACGTGA AAAAGGCTTT TGGAGACTTT AACAGGTTGA AAGAAAAGTT AAAAGTGTTT TTTGGGGTTA ATGTGGAGAT AGAGTATGAG GTAACAGAGT TAGAAAGAGA AGAGATTTTG GGAATTTTAA ACGGAACGGC TCCTTATGTA AAAGACGTAG AGATATTTGA GAATGAGATA TTGATAAGAA CATTTGGTGA ATTTGCCAAA AAAAAGATAG AAAAGGAAAT AAACCATATA GAGAAGGTTA CGGGGAAAAC GGTAAAAGTG GAAATTGTTG AGGAAACATT TAAAATTGAA CCTCCGAAAA TAGAAAATAA TTTAAAGAAA TTTGATGAAG ATAAAAAGTA TTATTTCCCA TCGAATATAC CGTTGAATGC GAAAAGGGTA TTTTTGAGGG GAAAGGTTTT TAAATTGGAA CAACAATATG GAGTTTTTTC TGTATACATT ACGGATAGAA AAGAGTCTAT TTTGGGAAAG ATTTTTGATA ATGCAAATGA ATTTAGTACG TTAATAAAAG AGGGAAATTG GTATTATTTT AAGGGTTCAA TGGGTGTTGA CAAAAGAGGA GGATATTATT TTGCAATAAA TGATGTATTT AAAGATCCAA GTCCCATAGA AAGAAAAGAT ACCTATGAAG AAAAAAGAGT AGAATTACAT ATTCATTCAA AGATGAGTGA TTTAGATGCA ATCGTGGATA TAAAGGAAGT AGTGCGAAAG GTTAAAGAGT GGGGGTGGAG TGCAGTTGCA ATAACAGATC ATGGAAATGT TCAATCCATT CCTTATTTGT TTGAAGAAGC GGAAAAGAAT GGTATTAAGC CTATTTTTGG TACGGAAATG TATGTTTTAA ACGAAATGGG GGATATAGTA AAGAATTTGG TTGAAGACAA AATGTTAGAT GATGTAACGT ATACGGTGTT TGACCTTGAA ACAACAGGGA CAAACGCAAA ATTCGACGAG ATTATAGAAA TTGGTGCGGT AAAGTACAGA GACGGTAAGG TTATTAATAC CTTTTCAAGC TTTGTAAAAC CTACAAAGAG TATATCGGAA TTTACCCAAA AACTTACGGG AATTACAGAT GAAATGGTAA AAGATGCAAA ATCTATAGAA GAGGTTTTCC CGGAATTTTT GAAATTTATT GATGGGACCG TTTTAGTTGC ACATAATGCC GATTTTGACT ATGGGTTTAT TAGGGAGGTT AATAGAAGGT TATACAATAA AGAACTTGAT TTTGCTTATC TTGATACCTT GAAACTTTCC AAAGTACTAC TTAGAGGGAA GGTAAAATCC TTTGGGCTTG GAAAACTTGT GGAATATTTT AAGTTAGGGC CTTTTAAACA TCATAGGGCG TTTGAAGATG CAAGTGTAAC TGCCGATTTG TTTGGAAAAT TGTTGGAGCT ACTTTTAAAA AGAGGTATAA AGACATTGGG GCAGGTTAAT AATTTGAAGA ATACTTCATC AATCTCCACC ATTCGCACTA AAAAACAATT TAATCATATT ACAATTTTAG TAAGGGATAA GGTAGGATTA AAAAATCTCT ATAAATTAGT TTCAGATGCA CATGTAAAGT ATTTTAAATA TGTTCCTTTT GTTCCGAAAA AGGAGTTAAT AAAATACAGA GAAGGTCTTT TATTGGGTAC CGGTTGTGAA AGCGGAGAAA TCTTTCAAGC GTTAACGGGT TCTTCAACGG ATGAAGAAAT TTTAGAAATG TTAAAAGATT ACGATTACGT GGAGATTTTT CCCTTGGATA CTATTGTTAG TGTTGAAAGA GAAGTTGCAA AGCAGGTATA TAAAAGGTTG TATGAACTTG CAAAGAGACT AGATTTACCG GTGGTTATGG TAAGTAATGC ACATTTTTTG GAACCTGAGG ATATAAAGGC AAGGCATGTA CTTCTTTCGC CCATTGAAAA GAGTAATCCA CACGATGATG ATTTAAGGGA TAAAGACGCA AAGTTATACC TTAGAACTAC TGATGAAATG ATGAAAGAGG CTTTTGAGAT TTTTGAAGAT GAGAAAATTG CGTATGAAAT TGTTGTGGAG AATACAAATA AAATAGCTAA TAATATGATA GAGGATGTAA AACCTATAAA GAGAAAATTG CATCCTCCAA TAATTGAAGG TGCAGACGAA AAGGTAAGAT CGTTGTCAAT TAAACGTGCT AAAGAGTTGT ATGGTGATCC ACTACCTGAT GTTATTGAAA AAAGGTTGGA GAAAGAGTTG GAGAGTATAA TAGGACATGG TTATGCTGTG TTGTATGAGA TAGCACACCT TATTGTGAAA AAAGCAAATG AGGATGGATA CGTGGTTGGT TCACGTGGAT CTGTAGGTTC TTCGTTTGTT GCATATCTTA TGGGAATTAC AGAAGTAAAT CCTTTACCAC CACATTATCT ATGCCCGAAA TGTAAGTATT TAGAGTTTTC AAAAGATATG GGTTCAGGAT ACGATTTGCC CAACAAGCTT TGTCCTAAGT GTGGAACAAA GCTTGAAAAG ACAGGGCAAG ACATTCCATT TGAAGTTTTT ATGGGATTTA AAGGTGATAA GGTGCCGGAT ATTGATTTGA ATTTTTCAGG TGAATATCAA GAAAGGGCAC ATAGCTATAT AGTTGAACTT TTTGGTAAAG ATAATGTTTT AAGGGCAGGG ACTATTAGTA CCATAGCAGA AAAAAGTGCA ATAGGGTACG TGAAAAGTTA TATGGAAGTT AAAGGTGAAA CATTACATCA GGCAGAACAG ATTAGGTTGG CGGAAATGGT TGCTGGGGTA AAAAGAACAA CTGGACAACA TCCAGGCGGA TTGATGATTG TACCAAAAGA TATGACGGTA TATGATTTTA CCCCTATCCA GTACCCTGCC AACAAAAAAG ACTCTGAAAT GTGTACAACC CATTTTGCTT ACGAATCAAT CCACGATGAT TTGGTGAAAT TAGATGCGCT TGGACATGAT GACCCTACTA TGTTGAAACT TTTGTACGAG TATACAGGAG TAGATCCAAC TAAGGTTCCC ATGGATGATA AAAAGACGTT GGAGATATTC TCCTCTTTAA AACCTTTAAA GGTAAAAGCC GAGGAGCTTG GCATAGATGT TGGAACTATA GGTATTCCTG AGTTTGGAAC GAATTTTGTC CAGGAAATGT TAAAAGAAAC AAGGCCAAAG ACGTTTGCGG AATTAGTTAG AATTTCCGGA CTTTCACACG GTACAGATGT TTGGTTAAAT AACGCGCAAG ATATAATTAA GTCAGGAAAC GCCACACTTT CGGAAGTTAT ATCTTGTCGT GATGATATTA TGATATACCT TATCAATGCA GGTGTGGAAG AATCTCGCGC ATTTAAGATA ATGGAAAACG TTAGAAAGGG AAAGGGCATT TCAGAAGATG ATGAAAAGTT GATGAGAGAA AAAAACGTTC CTGAATGGTT TATACAATCT TGTAAAAAAA TAAAATATCT TTTCCCTAAA GCACACGCAG TTGCATATGT TAGTATGGCA TTTAGAATAG CGTACTTTAA GGTTCATTAT CCCCTTGCCT ATTATGCGGC GTATTTTTCA ATAAAGGGAG ATGAATTTTC CATTGAAACT ATTTTAAGGG GTATAAAATC TATAAAGAAA AAATTGGCGG AGTTAAATGC TCAAATGAAA AAAGACGTTA AAGAAAAGAA CGAAGAAAAG GTACTTGAGG CGGCTCTTGA AATGTACTTA AGAGGTTATT CTTTCTTGCC TCCTGATATA TTAAAAAGTG ATTATAGAAG GTTTATAATA GAGGGCAATG AATTAAGAAT ACCACTTAAC AAAATACCAG GTGTAGGGGA TAATGTGGCG TTATCAATTA TTCAAGCAAG AATGGAAAAG CCATTTACAT CTATTGATGA TTTAAAAAAA CGTACTAAGT TGAGTAAAGC ACACATTAAT ACAATGAGAA AGTTAAGGAT TTTAGAAGAC CTTCCAGAAA CGGATCAATC CACACTATTT GATTTTTAA
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Protein sequence | MKYVFEKLAF PVSRFYEYFN IEVSGEITKI VYEPSNRVLT FHVKKAFGDF NRLKEKLKVF FGVNVEIEYE VTELEREEIL GILNGTAPYV KDVEIFENEI LIRTFGEFAK KKIEKEINHI EKVTGKTVKV EIVEETFKIE PPKIENNLKK FDEDKKYYFP SNIPLNAKRV FLRGKVFKLE QQYGVFSVYI TDRKESILGK IFDNANEFST LIKEGNWYYF KGSMGVDKRG GYYFAINDVF KDPSPIERKD TYEEKRVELH IHSKMSDLDA IVDIKEVVRK VKEWGWSAVA ITDHGNVQSI PYLFEEAEKN GIKPIFGTEM YVLNEMGDIV KNLVEDKMLD DVTYTVFDLE TTGTNAKFDE IIEIGAVKYR DGKVINTFSS FVKPTKSISE FTQKLTGITD EMVKDAKSIE EVFPEFLKFI DGTVLVAHNA DFDYGFIREV NRRLYNKELD FAYLDTLKLS KVLLRGKVKS FGLGKLVEYF KLGPFKHHRA FEDASVTADL FGKLLELLLK RGIKTLGQVN NLKNTSSIST IRTKKQFNHI TILVRDKVGL KNLYKLVSDA HVKYFKYVPF VPKKELIKYR EGLLLGTGCE SGEIFQALTG SSTDEEILEM LKDYDYVEIF PLDTIVSVER EVAKQVYKRL YELAKRLDLP VVMVSNAHFL EPEDIKARHV LLSPIEKSNP HDDDLRDKDA KLYLRTTDEM MKEAFEIFED EKIAYEIVVE NTNKIANNMI EDVKPIKRKL HPPIIEGADE KVRSLSIKRA KELYGDPLPD VIEKRLEKEL ESIIGHGYAV LYEIAHLIVK KANEDGYVVG SRGSVGSSFV AYLMGITEVN PLPPHYLCPK CKYLEFSKDM GSGYDLPNKL CPKCGTKLEK TGQDIPFEVF MGFKGDKVPD IDLNFSGEYQ ERAHSYIVEL FGKDNVLRAG TISTIAEKSA IGYVKSYMEV KGETLHQAEQ IRLAEMVAGV KRTTGQHPGG LMIVPKDMTV YDFTPIQYPA NKKDSEMCTT HFAYESIHDD LVKLDALGHD DPTMLKLLYE YTGVDPTKVP MDDKKTLEIF SSLKPLKVKA EELGIDVGTI GIPEFGTNFV QEMLKETRPK TFAELVRISG LSHGTDVWLN NAQDIIKSGN ATLSEVISCR DDIMIYLINA GVEESRAFKI MENVRKGKGI SEDDEKLMRE KNVPEWFIQS CKKIKYLFPK AHAVAYVSMA FRIAYFKVHY PLAYYAAYFS IKGDEFSIET ILRGIKSIKK KLAELNAQMK KDVKEKNEEK VLEAALEMYL RGYSFLPPDI LKSDYRRFII EGNELRIPLN KIPGVGDNVA LSIIQARMEK PFTSIDDLKK RTKLSKAHIN TMRKLRILED LPETDQSTLF DF
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