| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0795 |
|---|
| Symbol | |
|---|
| ID | 5298040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 834802 |
|---|
| End bp | 836730 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640769073 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001306042 |
|---|
| Protein GI | 150020688 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | [TIGR03336] indolepyruvate ferredoxin oxidoreductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG TTACCGACAT GGTTTTATTA AACAAACCTG GAGAAAAAAT TCTTCTTTTA
GGTAACCATG CAATTGCACG AGGAGCTCTT GAAGCGGGGA TCGCCCTTTT TGCAGCATAT
CCTGGTACAC CAAGCTCTGA GTTAACAGAT ACAATGGCAT CTGTTGCAAA AGATGTAGGT
GTATATATGG AATACTCGAC AAATGAAAAA GTTGCTTTTG AAACGGCTCT TTCCGCTGCG
TGGAGTGGTC TTCGCTCAAT GACTGCAATG AAACATGTTG GTTTAAACGT TGCGGCTGAT
TCTTTTATGA GTGCCGTAGG TATGGGTGTT GAAGGTGGTT TTATTGTGAT GGTTGCAGAT
GATCCAAGTA TGTGGTCATC ACAAAACGAA CAGGATACAA GGGTATTTGG AAAATTTGCC
AATGTTCCCG TACTTGAACC ATGCAGTGTC CAAGAAGCAA AAGATCTCAC AAAATATGGG
TTTGAAATAA GCGAAAAATT CAAACATATG GTTATTCTTA GAACTACAAC CAGATCTTCC
CACATGAGAG GAGACGTAGT ATTAGGGAAA CTTCCTGATG AAATAGTTAA CAAAAAGAGA
CGTGTGGGAA AATTCCAAAA AGATCCAAAA AGATTTGTTG ATATACCAGC TCATTCAAAG
ACTTTCCATC CAAAAATATT GGAAAATATA GAAAAAATAA GGGAAGAATT CAACAATTGT
CCATTCAATA AAATAGAAGG AGAAGGAAAA GTGGGAATAA TCGCATCGGG ATTGGCATAT
GCATACGTTA AAGAAGCTAT ATCATGGTTA GGTCTTAAAG ATGTAAAAGT ATTAAAACTT
GCCACACCAT ATCCCGTACC ATTTGGTCTT GTGGAAAGAT TCTTAAAAGG ACTGGAAAAA
GTTTTAATTG TTGAAGAACT TGAACCTGTG GTGGAAGAAC AGATAAAGTT ATGGGTATAC
GACAAAGGTT TTAATTTGCC AATTTACGGA AAAAATATTG TCCCCAGAAT ATACGAAATG
GATACCAAAC GTGCAGTCAA AGCTATTTCA AGATTCTTGA ATATAGACAC ACCTATTGAC
TTTGAGGAAT TAGAAAGCAA ATATAAAGAA ATAAGTAGTA TTCTTCCTCC AAGACCACCT
TCACTATGTC CAGCGTGTCC ACATAGAAAC TCGTTCTTTG CCATAAACAA AGCAACGGGA
AAAAAGGCAA TATATCCAAG TGATATAGGT TGTTATACTT TGGGCGTTTT ACCTCCTTTA
AACGCTGTTG ATACAACAGT TGCAATGGGG GGTTCAATTG GCATTGCACA TGGTTTGAGC
GTATCGTTAA ATGGTGCCAC AAACGAAGAT ATATACAATA AAAAAGAAGT TGTAGTTGCA
ACTATTGGAG ATTCAACATT TTATCATACA GGACTTCCTG CTATTGCAAA CGCAATATAC
AATAGATCTA ACATACTAGT AGTTGTGGTA GACAATGAAA TAACTGCTAT GACGGGAGAC
CAACCAAATC CAGGTACTGG CGATACACCA CACGGCCTAG GTAAAAGAAT CCCAATTGAA
GATGTAGTCA AAGCAATGGG TGCAGATTTT GTTGAAGTGG TAAATCCATA CAACATAAAG
AAAACAACAG AAGTTATTAA AAAAGCACTT GAAGTAGAAG GTGTAAGTGT TGTTATCTCA
AGACAAGTTT GTGCGTTACA TAGAGTTGGG CAGGCAAAAA AGAAAAAGCA AAAATTACCA
ACGTTTAGGG TAAATCCAGA AAAATGTACA GGGTGTAAGG TTTGTATAAC AACATTTGGT
TGTCCTGCAA TTTTCTGGGA TAGTGAAAAT AAAAAAGCGA AAATTGATCC AACCATGTGT
TGGGGTTGTG GAAGTTGTGC CCAAATATGC CCATTTGGAG CCTTTGAACT TGTAAGGGAG
GCGAAATAA
|
|---|
| Protein sequence | MAKVTDMVLL NKPGEKILLL GNHAIARGAL EAGIALFAAY PGTPSSELTD TMASVAKDVG
VYMEYSTNEK VAFETALSAA WSGLRSMTAM KHVGLNVAAD SFMSAVGMGV EGGFIVMVAD
DPSMWSSQNE QDTRVFGKFA NVPVLEPCSV QEAKDLTKYG FEISEKFKHM VILRTTTRSS
HMRGDVVLGK LPDEIVNKKR RVGKFQKDPK RFVDIPAHSK TFHPKILENI EKIREEFNNC
PFNKIEGEGK VGIIASGLAY AYVKEAISWL GLKDVKVLKL ATPYPVPFGL VERFLKGLEK
VLIVEELEPV VEEQIKLWVY DKGFNLPIYG KNIVPRIYEM DTKRAVKAIS RFLNIDTPID
FEELESKYKE ISSILPPRPP SLCPACPHRN SFFAINKATG KKAIYPSDIG CYTLGVLPPL
NAVDTTVAMG GSIGIAHGLS VSLNGATNED IYNKKEVVVA TIGDSTFYHT GLPAIANAIY
NRSNILVVVV DNEITAMTGD QPNPGTGDTP HGLGKRIPIE DVVKAMGADF VEVVNPYNIK
KTTEVIKKAL EVEGVSVVIS RQVCALHRVG QAKKKKQKLP TFRVNPEKCT GCKVCITTFG
CPAIFWDSEN KKAKIDPTMC WGCGSCAQIC PFGAFELVRE AK
|
|---|
| |