| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0567 |
|---|
| Symbol | |
|---|
| ID | 5297300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 601353 |
|---|
| End bp | 602162 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640768829 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001305819 |
|---|
| Protein GI | 150020465 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000222411 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATA CGTTGGGTTA TTCATTTTGG TTGCTGATTT TCTTTTTAGT GCCGATTATT
ATAGTTCTTA GCTATAGTTT TATGGAAAAA TCTATTTATG GTGGGATTGA TTTTTCTTTT
TCGATTGATG GATATAAAAC TTTGTTCTCT GTTGGATACT TGAAAATACT TTGGAGAAGT
ATTTGGATAT CAGTTTTAGC TACAATAATT ACTATTTTGC TTGCCCTTCC GACAGCATAT
TTTATTGCGA ATAGTAAAAT TAAAAATTTT TTACTTTTAC TTGTTGTAAT ACCTTTTTGG
ACAAACTCAT TAATAAGGAT ATATGCGTGG ATTTTCGTGT TAGGAAACAA TGGAATAGTT
AATCAGCTAA TTTCAAAATT GACGGGTAAC TATATACAAT TTTTGTACAA CCCATTTGCA
GTAATATTAG TAATAGTCTA TACATACTTA CCTTATGCTA TCATACCATT ATTTGCTTCT
ATTGAAAGGT TAGATAAAAC AATTATGGAA GCGTCTTTAG ATTTAGGTTC AAGTAGATTA
AAAGCTTTTT TTAAGGTGTT AATTCCTAAC ATAAAATCGG GAATAATAAC CGCTACCATT
TTTGTTTTTA TTCCAGCACT TGGCTCTTAT GCAATTCCCG ATCTAGTTGG TGGTAAAAAT
TCCAAAATGG TAGGAAATGA AATTGTAAGG CAATTAACCG TTGCAAAGAA TTGGCCGGCA
GCTACAGCGA TTTCAGCGAT ATTAACAATA CTAACATTAA TGAGTGTACT TTTATTTGTA
AAACAAACGC AAAAAGGGGA GTTAAAATGA
|
|---|
| Protein sequence | MKYTLGYSFW LLIFFLVPII IVLSYSFMEK SIYGGIDFSF SIDGYKTLFS VGYLKILWRS
IWISVLATII TILLALPTAY FIANSKIKNF LLLLVVIPFW TNSLIRIYAW IFVLGNNGIV
NQLISKLTGN YIQFLYNPFA VILVIVYTYL PYAIIPLFAS IERLDKTIME ASLDLGSSRL
KAFFKVLIPN IKSGIITATI FVFIPALGSY AIPDLVGGKN SKMVGNEIVR QLTVAKNWPA
ATAISAILTI LTLMSVLLFV KQTQKGELK
|
|---|
| |