Gene Tmel_0563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0563 
Symbol 
ID5297771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp596600 
End bp598033 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content31% 
IMG OID640768825 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001305815 
Protein GI150020461 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00974378 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACAA AACACTGGAC ACAGTTAATA ATAGGATTGT TGTTTTTTGT GTTTTTGTTT 
TTCTCCAAAA CTCTTGCTTT TGGATTAGTT TTGCCCTTGT TTGCAATTGT GACAACTATA
TTTAATACGA AAAAGGTTTA TCATTATATT TTTCTTTTTA TATCTCTTTT ACTTTATTTT
TCTGCGTTTT TTGGGTTTAA ATACCTATTT GTTTTTAGTC CAAGATTTAA CTATTTACTT
TCTATTGTTT TGTACTTATT TTCACTACCA CTTCCTGGAT TGTTTAAATT TGTAAGAAAC
AGGATATATC AAATGTTAAT TTTACTTGTG ATATATGTAA CTGTTGTGTT TTTTATATTC
TTAGCAATGC CAGGAGATTA TACTTCAAAG TTTCTTGACC CGAAAATTAT GAAACAACCG
GAAATGATGG AGAGAATAAA AAAACTGTTT GGTGTAGGTG ATCCGTGGTA TGTAAAATAC
GCAAAACATA TGCGAAATTT CTTTAATTTG GAACTTGGAA TATCTTTTTC GGAATATCCC
AAACGAGTGG AAGAAATAAT TGCAGAAAGG CTTCCAAGAA CTGTATTTTT GTTTTTAATG
ACCACACTTT CTTCGTATGT TTTGGGATAT AACCTTGGAA AAAGAATTGC TTGGAAACGT
GGAGGCATTT CAGATAAAAT TGCCACATTT GTTGGAATAG TCTTTTGGAC TATATTTACT
CCGTTTTTTA TGCTTATTAT GATTTGGCTT TTTGGTGTTG TGTTGAAAAT ATTCCCAATA
AGCGGTTTTA TAGAACCATC TAAATGGTTG AACGTTAAAT TCTCTACTCA AGATGTATTT
ATAAGGCTTT TGTTAAGTGC GTTTTTACTA GTTGTTTTCT GGGTAGTAGG GTTAATAGTT
GCAGCATTTA TGAAAACAAA AAAGGCTAAA TCAATATCTA TGTTAAGCAT TACTTTTTTT
GGTATTGCTA TTGTAATTCT TTATTGGATA TTTAATGGAT ATGGGTATTA TGCATTAGAT
ATAGTGTATC ATGTTGTTCT TCCAGTATTA TCATTAACAG TTCTTGGTTT TGCGGGAAGT
ATGTTGGTTA TGAGAGATAC TATGCTTGAG ATAATAAAAG AAGATTATAT TACAACAGCA
AAAGCTAAAG GACTTCCCGA TAAAGTTGTG AGAGACAAAC ATGCGGCAAG AACGGCGTTA
TTACCGTTAG TTACTAGTTT TGTTTTATCC CTTGCAACTA CTGTTAGTGG TGGTGTTATT
ACAGAGACTA TGTTTTCTTG GAAAGGTATG GGACTTACTT TATTAAATGC TACACTTGTT
CAAGATACAC CTCTTGCAAT GGGATGTTTA ACTTTTACCG GTGTGTTTAT TCTTGTGGCT
CATTTGGTAG CTGATATTCT ATATGCAATC CTTGATCCTA GAATTAGATA TTGA
 
Protein sequence
MNTKHWTQLI IGLLFFVFLF FSKTLAFGLV LPLFAIVTTI FNTKKVYHYI FLFISLLLYF 
SAFFGFKYLF VFSPRFNYLL SIVLYLFSLP LPGLFKFVRN RIYQMLILLV IYVTVVFFIF
LAMPGDYTSK FLDPKIMKQP EMMERIKKLF GVGDPWYVKY AKHMRNFFNL ELGISFSEYP
KRVEEIIAER LPRTVFLFLM TTLSSYVLGY NLGKRIAWKR GGISDKIATF VGIVFWTIFT
PFFMLIMIWL FGVVLKIFPI SGFIEPSKWL NVKFSTQDVF IRLLLSAFLL VVFWVVGLIV
AAFMKTKKAK SISMLSITFF GIAIVILYWI FNGYGYYALD IVYHVVLPVL SLTVLGFAGS
MLVMRDTMLE IIKEDYITTA KAKGLPDKVV RDKHAARTAL LPLVTSFVLS LATTVSGGVI
TETMFSWKGM GLTLLNATLV QDTPLAMGCL TFTGVFILVA HLVADILYAI LDPRIRY