| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0518 |
|---|
| Symbol | |
|---|
| ID | 5298258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 556173 |
|---|
| End bp | 557345 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 640768779 |
|---|
| Product | RecB family-like nuclease |
|---|
| Protein accession | YP_001305770 |
|---|
| Protein GI | 150020416 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2251] Predicted nuclease (RecB family) |
|---|
| TIGRFAM ID | [TIGR03491] RecB family nuclease, putative, TM0106 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.13317 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTTA ACATATCGAA AATTAGAACT TACTTTTTTT GTCCAAAGAA ATTTTTTTTA
GAATCAAAAA ATGAAAGTTT TGATAATACA TTAAGCTATT TACCTAAAAA GGGGAAAGAG
AATATATCTT TGGCGTATGA TTTTCTTGGT GTGACTTTAG TTGTAAAAAA CGTTGAAATA
ATAATTGGTG AAAAAATAAC AATTATTTCT AGAAGAAGGG GAAAAAGGCT TTATCAGTAT
CATTACCTTG AGGCTGCTGG ATATGCCTAT GTTGTTTCAA AATTTACGAA TAAGGAAATA
GAAGTAATTT TTAAGAGTAA CTACTACAAC GTAAAAATGC CTTGGGAAAA ATACATAAAT
TCATTTCAAA ACGCTATTCA GTATTTTTCC GAAAATAACT ATTTTAGACC TAAATTAAAC
CCTGAATGTA AGTTTTGCAA GTACAGTTTT GAATGTACTA ATGAACTTAT GGCGTATAGA
GATATTTCTT TAATAAGGGG AATTGGAAAG TATAGGCTTG AAAAGCTAAA AGAATACGGT
ATAAATACAT TGGATGATTT GGTTGAAAAT CAAAAAAAAG TTAAAGAAAT TTTTAAGGGG
AAAACAAATA AAATCATTGC ACAGGCAAAA GCTTTTTTAG AAAAAAAGGT GATATTGATA
AATTCAATAT CTAGATTAAG TTCCGGGATA TTTCTTGATA TAGAAAGCTA CAACGATTTT
CATTTCCTGT TTGGAGTTCT ATATAATGAT AGATATATTC CGTTTTTATC CACCAAAAAA
AAGGAGGAAA AAATTGCAGT AAAAAATCTA TTAAAATTTT TAAAGGAAAA AAATTTACCT
GTATATCATT ATTATAATTA TGAACCTTTG CAAATAAACA AGTTAATAAA AAAATACAAA
TTAAGAAATC CAAAGTTAGT ATTTGTTGAT CTGTACACAA TTTTTTCCAG AAACATTGCG
GTACCAACTA TTTCATATTC TTTAAAATCA CTGGCAAAAT ATTTTGGTTT TAACTGGAGA
ACAACCTTAA ATGGAAACAA CGTCGTACAA AAGTTTGAAG AATTTTTGCG AACAAAAGAT
AAATCAATTT TGAAAGAAAT TTTGAAATAT AATGAGGATG ATGTAAGAGC CACAAAGCTT
TTATTAGATG TTGTTAACAA AATTTCAAGT TAA
|
|---|
| Protein sequence | MIFNISKIRT YFFCPKKFFL ESKNESFDNT LSYLPKKGKE NISLAYDFLG VTLVVKNVEI
IIGEKITIIS RRRGKRLYQY HYLEAAGYAY VVSKFTNKEI EVIFKSNYYN VKMPWEKYIN
SFQNAIQYFS ENNYFRPKLN PECKFCKYSF ECTNELMAYR DISLIRGIGK YRLEKLKEYG
INTLDDLVEN QKKVKEIFKG KTNKIIAQAK AFLEKKVILI NSISRLSSGI FLDIESYNDF
HFLFGVLYND RYIPFLSTKK KEEKIAVKNL LKFLKEKNLP VYHYYNYEPL QINKLIKKYK
LRNPKLVFVD LYTIFSRNIA VPTISYSLKS LAKYFGFNWR TTLNGNNVVQ KFEEFLRTKD
KSILKEILKY NEDDVRATKL LLDVVNKISS
|
|---|
| |