Gene Tmel_0336 details

Gene Information

• Locus tag: Tmel_0336
• ID: 5298222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 343823
• End bp: 344473
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 640768593
• Product: L-serine dehydratase, iron-sulfur-dependent, beta subunit
• Protein accession: YP_001305591
• Protein GI: 150020237
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1760] L-serine deaminase
• TIGRFAM ID: [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.866527
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATTT TAAAAGTACT TGGTCCCATT ATGGTTGGAC CTTCAAGTTC TCATACACTT 
GGTGCAATAA AAATTGCACG ATTTGTACAT AAATTAATAG GTGGGATACC AGAAGAAGTA 
CAGTTTCTAC TTCACGGTTC ATTTTCAAAG ACATATAGAG GCCATGGTAC AGATAGGGCT 
TTACTTGCAG GTATTATGGG CTTACAACAA GATGATCCAA AAATAAAAAA TGCATTCGAA 
ATTGCTAAAG AAAAAAATTT AAAATACTCC TTTAAGGTTA CCGACCTTGG AGATGTTCAT 
CCAAATACCG TTAGAATAAA ATGTACTAAA GACGGTATAT CTCATGAAAT AGAAGGATCA 
TCAATTGGCG GAGGAAATAT ACTAATTACA AGTATTGATT CCGTGCCATG TAATCTTTCC 
TGGGATTTCG ATACCCTTGT TATTGTAAAC AAAGATGTTC CCAAAGCATT GGAAAAAATT 
TTGGAAACAA TAAAAGTAAA TGTAGCAAAT CTATATCTTA GGAGAATCAA TGCACTACTT 
GAAAGGGCTC TTACCATTAT TGAATTAGAT GAACCCATAG AAAATTTAGC CGAAATCAAA 
AAACTTTCTT GGGTATATGA ATGCTATTTT GTTAGGAGGG ATACCAAGTG A 

 

Protein sequence

MSILKVLGPI MVGPSSSHTL GAIKIARFVH KLIGGIPEEV QFLLHGSFSK TYRGHGTDRA 
LLAGIMGLQQ DDPKIKNAFE IAKEKNLKYS FKVTDLGDVH PNTVRIKCTK DGISHEIEGS 
SIGGGNILIT SIDSVPCNLS WDFDTLVIVN KDVPKALEKI LETIKVNVAN LYLRRINALL 
ERALTIIELD EPIENLAEIK KLSWVYECYF VRRDTK