| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0161 |
|---|
| Symbol | |
|---|
| ID | 5296687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 172812 |
|---|
| End bp | 173762 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640768418 |
|---|
| Product | ribose-phosphate pyrophosphokinase |
|---|
| Protein accession | YP_001305423 |
|---|
| Protein GI | 150020069 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0462] Phosphoribosylpyrophosphate synthetase |
|---|
| TIGRFAM ID | [TIGR01251] ribose-phosphate pyrophosphokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATAA CAAAAAATGA GATGAAAATA TTCTCAGGAA ATGCCAATAA AGAACTTGCA
ATAAAGGTAT CGGAATATAT CGGTACACGC CTTGCCAATT GTGAAGTTGG AAGATTTGCA
GACGGTGAAA TAAACGTAAA GATTGGTGAA ACAGTTAGAG GACACGATAC TTTTATCGTT
CAACCAACTT GTCCCCCTGT AAACGAAAAT CTAATGGAAT TGTTAATAAT GATAGATGCA
CTAAAACGCG CATCGGCAAA CAGTATAGCG GTGGTTATAC CATACTATGG ATATGCAAGA
CAGGACAGAA AAGCCAAAGG ACGTGATCCT ATAACTGCAA AGTTAGTAGC AAATTTATTA
ACCACTGCTG GAGCTACAAG AGTTATGACT GTTGATTTGC ACTCTGAACA GATACAAGGA
TTTTTTGATA TACCACTTGA TAATTTATGG AGTTTCCCTA TATTTGCAAA ACAATTGAAA
AGGGATAAAA TAGTAGATGA TGAATATGTA ATTGTATCAC CAGATGTTGG TGGTGTAAAA
AGAGCAAGAC AATTTGCTGA AAGATTAGGC GGACCTCTTG CAATATTGGA CAAAAGGAGG
CCAAAGGATA ATGAAGCAGA GATTTTGAAT ATAATAGGAG ATGTAAAAGA TAAAACGGCA
ATTATTGTGG ACGATATTGC GGATACAGCA CGTTCTCTTG TTAAAGCAGC AAAGGCTATA
AAAGAGAATG GTGCAAGAAG GGTAATTGCT TGTATCACAC ATCCCGTACT TTCTGATGGT
GCAATTGAAA GAATTCAAAA TTCAGAAATT GAAAAAATAT ATATTTCCGA TTCGATCAGT
CATAACAATC TACCAGATAA ATTTTCCGTA GTATCACTTG CACCACTGCT TGGTGAAGCT
ATTATGAGGG TGAGAAAAAA CTTATCTGTA AGTATACTAT TTAGGCAATA A
|
|---|
| Protein sequence | MQITKNEMKI FSGNANKELA IKVSEYIGTR LANCEVGRFA DGEINVKIGE TVRGHDTFIV
QPTCPPVNEN LMELLIMIDA LKRASANSIA VVIPYYGYAR QDRKAKGRDP ITAKLVANLL
TTAGATRVMT VDLHSEQIQG FFDIPLDNLW SFPIFAKQLK RDKIVDDEYV IVSPDVGGVK
RARQFAERLG GPLAILDKRR PKDNEAEILN IIGDVKDKTA IIVDDIADTA RSLVKAAKAI
KENGARRVIA CITHPVLSDG AIERIQNSEI EKIYISDSIS HNNLPDKFSV VSLAPLLGEA
IMRVRKNLSV SILFRQ
|
|---|
| |