| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0112 |
|---|
| Symbol | |
|---|
| ID | 5296515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 113816 |
|---|
| End bp | 114727 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640768363 |
|---|
| Product | phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001305374 |
|---|
| Protein GI | 150020020 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATTC ACGTAAATGA CCCTCTTGAT AAAGTCGCTA TGGAAAGACT CAAAAAATCT
GGTCATACAG TTACTGATGT ACACCTTGAA AAAGATGAAC TCATAAAAGA AATGTCAGAC
ATTGACGTAT TGGTTGTAAG AAGTGCTACG AAGGTTACCG CAGATGTTAT TGAAGCTGGT
AAAAGACTTA AAATCATTGC AAGAGCAGGA ACAGGATTAG ACAATGTTGA TGTAGAAAAA
GCAAAAGAAA AAGGTATAAA AGTCTTAAAC ACACCGGGAG CCAACGGAAT TTCCGTGGCT
GAATTAGCCA TTGGATTGAT GATTGCCTGT GCAAGACATA TAGCAAAAGG AACATTAGAT
TTAAAATCAG GAGAATGGAC AAAAAAACAA TTAAAAGGAC ACGAACTTTA TAAAAGAACA
GTTGGTATAA TTGGATTTGG AAATATCGGA AAAGAAGTGG CAAAAAGATT GCTTGCATTT
GATATGAATG TTCTTGCATA CGATCCTTTC ATAAAAGAAA CAGATTTAAA CGTTAAACTC
GTAGATTTAG ACACAATTTT TAAAGAATCA GATTTTATCA CTATACATGT TCCAAAAACT
CCTGAAACCA CACACCTTAT AAACAAAGAA GCATTTGAAT TAATGAAGGA TGGAGTAATT
ATAGTAAACG CAGCACGTGG TGGAGTTGTA GACGAGGAAG CTTTGTACAA CGCTCTTGTT
TCTGGCAAAG TTTATGCCGC TGGGTTAGAC GTTTTTGAAG TTGAACCGCC TAATGACGAA
CTAAGAAAAA AATTACTTGA GCTACCAAAC ATCGTCGCAA CTCCGCATAT AGGAGCATCA
ACAAAAGAAG CTCAACTTAG GGTAGGACAA ATAATAGTAG ACAAGATATT GAATGAAATT
GAAAAAATCT AA
|
|---|
| Protein sequence | MRIHVNDPLD KVAMERLKKS GHTVTDVHLE KDELIKEMSD IDVLVVRSAT KVTADVIEAG
KRLKIIARAG TGLDNVDVEK AKEKGIKVLN TPGANGISVA ELAIGLMIAC ARHIAKGTLD
LKSGEWTKKQ LKGHELYKRT VGIIGFGNIG KEVAKRLLAF DMNVLAYDPF IKETDLNVKL
VDLDTIFKES DFITIHVPKT PETTHLINKE AFELMKDGVI IVNAARGGVV DEEALYNALV
SGKVYAAGLD VFEVEPPNDE LRKKLLELPN IVATPHIGAS TKEAQLRVGQ IIVDKILNEI
EKI
|
|---|
| |