| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0052 |
|---|
| Symbol | groEL |
|---|
| ID | 5296548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 55681 |
|---|
| End bp | 57300 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640768304 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001305316 |
|---|
| Protein GI | 150019962 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00947339 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGA TGTTAAGATT TAGTGAAGAA GCAAGAAGAG CTCTTGAAAG AGGTGTAGAT
GCAGTTGCAG ATGCAGTTAA GATTACGTTA GGACCAAAAG GTAGAAACGT AGTTATTGAA
AAATCCTGGG GAAGCCCTAC GATTACAAAT GATGGTGTTT CAATTGCAAA GGAAATAGAA
CTTGAAGATA AATTCGAAAA TCTTGGTGCA CAACTTGTAA AAGAAGTTGC AAGTAAAACA
AACGACGTAG CAGGTGATGG TACGACAACA GCTACAGTTC TTGCTCAAGC AATGATTAAG
GAAGGTATTA AAAACGTTAC AGCAGGTGCA AATCCAATTC TTGTAAAAAG AGGAATTGAT
AAGGCAGTAG CAGCTGCAGT TGAGAAAATC AAAGATATTT CAAAAAAATT ATCAAATTCT
GATGATATTG CTCACGTAGC ATCCATTAGT GCAAACAGTG AGGAAATTGG AAAATTAATT
GCTGAAGCAA TGGAAAAAGT TGGAGAAGAT GGAGTTATTA CCGTAGAAGA TAGTAAATCA
ATTGATACGT TTGTTGAATT TACAGAAGGT ATGCAATTTG ACAGAGGATA TATTTCTCCA
TATTTCGTAA CGGACCCTGA AAAAATGGAA GTTGTATACA ATGAACCTTT CATTCTTATT
ACAGATAGAA AACTTTCAAA TATAAAACCA TTAATACCAA TCCTTGAAAA AGTTGCGCAG
ACGGGAAAAC CATTGGTAAT AATTGCAGAG GATGTTGAAG GTGAAGCATT AACAACACTT
GTACTTAATA AACTAAAAGG CACACTTAAT ACGGTAGCAG TAAAAGCTCC TGGTTTTGGA
GATAGGAGAA AAGCAATGCT TCAAGATATA GCAATCCTTA CTGGTGGAAT TGTGGCAAGT
GAAGAAGTTG GAATTAATCT TGAAGATTTG ACATTGAATG ATCTTGGAAG AGCAGATGTT
GTAAGAGTAA AGAAAGACGA AACAATCATT GTAGGAGGTC ACGGAGATCA AGAAGAGATT
AAGAAGAGAA TTGCTCAAAT TAAGGCACAA ATTGAACAAA CAACATCTGA ATATGAAAAA
GAAACATTAC AAGAAAGAAT GGCAAAGCTT GCAGGTGGTG TAGCAGTAAT TAAAGTTGGA
GCAGCAACAG AAACAGAATT AAAAGAAAAG AAACACAGAA TTGAAGATGC GTTATCTGCA
ACAAGGGCAG CAGTTGAAGA AGGTATTGTT CCAGGTGGAG GAATTACACT ACTTCGTGCA
AGAAAACCGG TTGAAAAAAT TGTTGAAGAA TTAGATGGTG ATGAAAAGAT TGGTGCAAAG
ATTGTTTACG AAGCATTGAG TGCTCCTATT AATCAAATTG CAAAGAATGC AGGTTACGAT
GGTGCAATTA TTATCCACAA AGTTCTTGAG CAAGATGATC CAGCGTACGG TTTTGATGCG
TTAAAAGGAG AATACTGCGA TATGTTTGAA CGTGGAATTA TTGATCCCGC AAAAGTTACA
AGAAGTGCAC TTCAAAACGC AGCATCAATT GCAGGTATGC TCCTTACAAC AGAAGTACTT
GTAGTTGAAA AACCAGAACC AAAAAACAAT AACCCAATGC CAGAAATGCC AGAATATTAA
|
|---|
| Protein sequence | MAKMLRFSEE ARRALERGVD AVADAVKITL GPKGRNVVIE KSWGSPTITN DGVSIAKEIE
LEDKFENLGA QLVKEVASKT NDVAGDGTTT ATVLAQAMIK EGIKNVTAGA NPILVKRGID
KAVAAAVEKI KDISKKLSNS DDIAHVASIS ANSEEIGKLI AEAMEKVGED GVITVEDSKS
IDTFVEFTEG MQFDRGYISP YFVTDPEKME VVYNEPFILI TDRKLSNIKP LIPILEKVAQ
TGKPLVIIAE DVEGEALTTL VLNKLKGTLN TVAVKAPGFG DRRKAMLQDI AILTGGIVAS
EEVGINLEDL TLNDLGRADV VRVKKDETII VGGHGDQEEI KKRIAQIKAQ IEQTTSEYEK
ETLQERMAKL AGGVAVIKVG AATETELKEK KHRIEDALSA TRAAVEEGIV PGGGITLLRA
RKPVEKIVEE LDGDEKIGAK IVYEALSAPI NQIAKNAGYD GAIIIHKVLE QDDPAYGFDA
LKGEYCDMFE RGIIDPAKVT RSALQNAASI AGMLLTTEVL VVEKPEPKNN NPMPEMPEY
|
|---|
| |