| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0045 |
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| Symbol | |
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| ID | 5296786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 47783 |
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| End bp | 48796 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640768297 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001305309 |
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| Protein GI | 150019955 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGGAAAAAT ACATGAAGCT TGCTATTGAA CTTTCAAAAA AAGGTATAGG AAAGGTTTCA
CCAAATCCCC TAGTTGGGGC GGTAATTGTA AAGAATGGTA AGATTATTGG TATGGGTTAT
CATGAAAGAT ATGGCGGTTT TCATGCAGAA AGAAACGCAA TTTTAAATGC AAAAGAAGAT
GTAAAAGGCT CATCTTTGTT TGTAAATCTT GAACCTTGTT CCCACCATGG AAAAAACCTA
CCATGTGTTG ATTTAATAAT TTCTTCCGGA ATATCTAAAG TGTATATTGC CAGTGTTGAT
CCTAATCCCC TTGTAAATGG AAAAGGTATA GAAAAATTGA AAAAGAACGG TATTGAGGTA
GATGTTGGGC TTTTAAGTGA TGAAGCAAAA TATTTAAATA GGGTGTTTTT TAAGTATATT
ACAAAAAAAC TTCCTTATGT TGCTTTGAAA GTAGCACTTA CTTTAGACGG TTTTATTGCG
GATTCAAATG GAAATTCAAA GTGGATTACA AAACAAAATT TTAATGTTTC ACACTCTCTT
AGAAATTTTT TCTCAAGTAT TTTAGTTGGT GCAAATACTG TTTTGAAGGA TAATCCAAGG
CTTACTTGTA GAAACGGTGG AAGAAACCCT GTGAGAATTG TTTTAGATAG AGATGGGATT
ACTTTGGGAA GAGGTTTTAA CGTTTACAAT GAAGAAGCAA GAACAATAGT TTTTTCAAAA
TGTTGTCAAG GTACTTTGGA ATGTTATCCA GAAACTGAAC CTTTTGATAT ATTATCTAGA
CTATATAATC TTGGTATAGA TTCTGTATTA ATAGAAGGTG GTGCAAGTGT TCTATCACAA
TTTTTAAATT TTGCTGACGA ATTACATTTA TTTTATTCTA CAAAAATTTT TGGTAGAGGA
CTTTCACCTT TTGAAAATAT AATAAAATTT GTTTCACAGA ATATGGAGTT TAAAATAAGG
AATTTAAAGC GATTGGAAGA TGAATTTTAC TTGGAGGTAT TTAGAAATGT TTAG
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| Protein sequence | MEKYMKLAIE LSKKGIGKVS PNPLVGAVIV KNGKIIGMGY HERYGGFHAE RNAILNAKED
VKGSSLFVNL EPCSHHGKNL PCVDLIISSG ISKVYIASVD PNPLVNGKGI EKLKKNGIEV
DVGLLSDEAK YLNRVFFKYI TKKLPYVALK VALTLDGFIA DSNGNSKWIT KQNFNVSHSL
RNFFSSILVG ANTVLKDNPR LTCRNGGRNP VRIVLDRDGI TLGRGFNVYN EEARTIVFSK
CCQGTLECYP ETEPFDILSR LYNLGIDSVL IEGGASVLSQ FLNFADELHL FYSTKIFGRG
LSPFENIIKF VSQNMEFKIR NLKRLEDEFY LEVFRNV
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