Gene TBFG_13079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTBFG_13079 
SymbolligB 
ID5223767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium tuberculosis F11 
KingdomBacteria 
Replicon accessionNC_009565 
Strand
Start bp3437348 
End bp3438871 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content68% 
IMG OID640607847 
ProductATP-dependent DNA ligase 
Protein accessionYP_001289008 
Protein GI148824254 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR00574] DNA ligase I, ATP-dependent (dnl1) 


Plasmid Coverage information

Num covering plasmid clones354 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones211 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCCTTC ACGACGTGGC CATCACCTCA ATGGACGTGG CCGCCACCTC GTCGCGGCTG 
ACCAAGGTCG CGCGCATCGC CGCCCTGTTG CACCGCGCCG CGCCAGACAC ACAGCTGGTC
ACGATCATCG TGTCGTGGCT CTCCGGCGAG CTGCCGCAAC GCCATATCGG TGTCGGGTGG
GCGGCATTGC GGTCCCTACC GCCGCCCGCG CCGCAACCGG CGTTGACCGT CACCGGTGTC
GACGCCACCC TCTCTAAGAT CGGCACTCTA TCGGGCAAAG GGTCTCAGGC GCAGCGCGCG
GCACTCGTTG CGGAATTGTT CTCCGCCGCA ACCGAAGCTG AGCAAACCTT TTTGTTGCGA
CTGCTCGGCG GTGAACTGCG CCAGGGCGCA AAGGGCGGGA TCATGGCCGA TGCGGTCGCC
CAGGCCGCCG GGCTCCCGGC CGCGACGGTC CAACGCGCCG CGATGCTAGG CGGCGACCTG
GCGGCAGCGG CGGCGGCCGG CCTGTCCGGC GCGGCGCTGG ACACCTTCAC CCTGCGAGTG
GGCCGACCGA TAGGCCCGAT GCTGGCACAG ACCGCGACCA GCGTCCATGA TGCACTCGAA
CGTCACGGCG GCACAACCAT TTTCGAGGCT AAACTAGACG GCGCGCGAGT GCAGATCCAC
CGGGCAAACG ACCAGGTCAG GATCTACACC CGAAGCCTGG ACGACGTCAC TGCCCGGCTG
CCCGAGGTGG TGGAGGCAAC ACTGGCACTG CCGGTCCGGG ATCTAGTGGC CGACGGCGAG
GCGATCGCGC TGTGCCCGGA CAACCGGCCG CAGCGTTTCC AGGTCACCGC ATCACGGTTC
GGCCGATCGG TCGATGTTGC GGCTGCCCGC GCGACGCAGC CACTTTCGGT GTTCTTCTTC
GACATCCTGC ATCGGGATGG TACCGACTTG CTCGAAGCGC CGACCACCGA GCGGCTGGCC
GCCCTGGACG CACTGGTGCC GGCTCGGCAC CGCGTGGACC GGCTGATCAC GTCCGATCCA
ACGGACGCGG CCAACTTCCT GGATGCGACG CTGGCCGCCG GCCACGAGGG GGTGATGGCC
AAGGCACCGG CCGCTCGTTA CCTTGCGGGT CGCCGCGGAG CGGGCTGGCT GAAGGTCAAG
CCGGTGCACA CACTCGACTT GGTGGTGCTC GCGGTGGAAT GGGGCTCGGG ACGCCGGCGC
GGCAAGCTCT CGAATATTCA CCTGGGCGCA CGCGATCCGG CTACCGGTGG ATTCGTGATG
GTGGGCAAGA CCTTCAAAGG AATGACCGAC GCCATGCTGG ACTGGCAGAC CACCAGGTTT
CACGAGATCG CGGTGGGTCC GACAGACGGC TACGTCGTCC AACTTAGGCC CGAGCAGGTG
GTCGAGGTAG CCCTCGACGG CGTGCAAAGG TCGTCGCGCT ACCCGGGCGG GCTGGCATTG
CGGTTTGCCC GCGTGGTGCG CTACCGCGCC GACAAGGACC CGGCCGAGGC CGACACCATC
GATGCCGTGC GCGCGCTCTA CTGA
 
Protein sequence
MLLHDVAITS MDVAATSSRL TKVARIAALL HRAAPDTQLV TIIVSWLSGE LPQRHIGVGW 
AALRSLPPPA PQPALTVTGV DATLSKIGTL SGKGSQAQRA ALVAELFSAA TEAEQTFLLR
LLGGELRQGA KGGIMADAVA QAAGLPAATV QRAAMLGGDL AAAAAAGLSG AALDTFTLRV
GRPIGPMLAQ TATSVHDALE RHGGTTIFEA KLDGARVQIH RANDQVRIYT RSLDDVTARL
PEVVEATLAL PVRDLVADGE AIALCPDNRP QRFQVTASRF GRSVDVAAAR ATQPLSVFFF
DILHRDGTDL LEAPTTERLA ALDALVPARH RVDRLITSDP TDAANFLDAT LAAGHEGVMA
KAPAARYLAG RRGAGWLKVK PVHTLDLVVL AVEWGSGRRR GKLSNIHLGA RDPATGGFVM
VGKTFKGMTD AMLDWQTTRF HEIAVGPTDG YVVQLRPEQV VEVALDGVQR SSRYPGGLAL
RFARVVRYRA DKDPAEADTI DAVRALY