| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2387 |
|---|
| Symbol | trmE |
|---|
| ID | 5205111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2974408 |
|---|
| End bp | 2975805 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640600650 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001281277 |
|---|
| Protein GI | 148654184 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.188748 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000106684 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACACA CCACCACCAT TGCTGCCATC GCCACCCCTG TCGGTCGCGG CGGCGTAGGG
ATTATTCGAC TGTCAGGCCC CAAGGCTTAT GCCATTGCCT GTGCACTGAC CGGTAAGGAG
AGTTTTACGC CTCGTTTGGC CAGTTTTTGC CGTTTTTACG ATGCCAATAA CAATGTGCTA
GATGAAGGCC TGGTCTTGTA CTTTAAAGCG CCGCATTCGT TCACAGGTGA GGACGTTATC
GAGCTGCAGG GTCATGGTGG CATGATATTG CAAAACCAGC TGTTAGCGCG CGTATTTGAG
CTTGGTGCGC ATCAAGCTCA AGCAGGTGAA TTCTCCTACC GTGCCTTTGA TAATGACAAA
CTAGACTTGC TACAAGCAGA GGCCATTGCT GATGCCATTG ATGCCACCAG TGCTGCTGCT
GCCAGTAGTG CTATCCGCTC TTTAACCGGC GCTTTCTCTA ACAAGATTAA TGAGGTATTA
GAGGCGTTAA TTGAGCTGCG TTTGTATGTC GAAGCTTCCA TCGACTTTCC TGATGAAGAG
GATGTGGACT TCTTAAGCGA TGGGGTTATT GAGGGCAAGT TACAGCGCAT ACAGCAGCAG
TTAACCACCA TCTTATCCAC AGCCCAACAA GGTCAGCTTT TGCGCGATGG GGTGCACGTG
GTATTGGCCG GTCGCCCCAA TGCGGGTAAA TCAAGCCTGC TAAACAGCTT AGCAGGTCAA
GAGCGTGCTA TTGTCACCGA TGTGGCCGGC ACCACGCGTG ACACGTTGCA AGAAACCATA
GTGCTCAATG GGCTGACCAT TCATTTGACT GATACCGCAG GTCTGCGTGA CACCACAGAT
GCTGTAGAGC GTATAGGTAT CGAAAGAGCT CGTACCGCTA TCAATCAAGC GGATTTGCTG
TTGTTAGTGT ATGATTTATC TCAAGAAGTT GACCCCTTAA AACTGGCTTC AGAGCTGTTT
GGAGAAGGTA TAGATGGCAC CCCAAACTTT GATCCCAGTA AGCTGCTGCT TATTGGTAAT
AAGCGCGATT TAGTTGAAGA TAAGGGTGAG AGTGCCAATA AGTTGGCAGA TAAGGCAGAT
ATTTTAGGGT ATGAGCAGGT TAATGTTTCA TGTGAAACCT CACAAGGTAT CCCACAATTA
ATCGCTAGTT TGTGCGATAA AGTCGGCTTT CATCCCCCCG AAAACAGCCT AATTGCCCGC
ACCCGTCACC TAGATGCTTT GCGCCGTACA CAGCAGCATG TGGATGAAGC ACATCAACAA
TTGGTGATAT ATCAAGCAGG CGAATTGGTG GCTGAAAGCC TACGTCAAGG TCAGTATAGC
TTAGGTGAGA TTACTGGTGA ATTTAGTGCA GATGACTTAT TGGGTCGTAT CTTTGGCAGC
TTTTGTATCG GTAAATAA
|
|---|
| Protein sequence | MTHTTTIAAI ATPVGRGGVG IIRLSGPKAY AIACALTGKE SFTPRLASFC RFYDANNNVL
DEGLVLYFKA PHSFTGEDVI ELQGHGGMIL QNQLLARVFE LGAHQAQAGE FSYRAFDNDK
LDLLQAEAIA DAIDATSAAA ASSAIRSLTG AFSNKINEVL EALIELRLYV EASIDFPDEE
DVDFLSDGVI EGKLQRIQQQ LTTILSTAQQ GQLLRDGVHV VLAGRPNAGK SSLLNSLAGQ
ERAIVTDVAG TTRDTLQETI VLNGLTIHLT DTAGLRDTTD AVERIGIERA RTAINQADLL
LLVYDLSQEV DPLKLASELF GEGIDGTPNF DPSKLLLIGN KRDLVEDKGE SANKLADKAD
ILGYEQVNVS CETSQGIPQL IASLCDKVGF HPPENSLIAR TRHLDALRRT QQHVDEAHQQ
LVIYQAGELV AESLRQGQYS LGEITGEFSA DDLLGRIFGS FCIGK
|
|---|
| |