Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_2310 |
Symbol | rho |
ID | 5206131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 2877323 |
End bp | 2878621 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640600573 |
Product | transcription termination factor Rho |
Protein accession | YP_001281200 |
Protein GI | 148654107 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000407022 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.229849 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAAC AACCATCGAA CGAAACCTCT ATGAACCTGA CTGAACTAAA AAAGAACTCC GTTGCTGAAT TGCTAAATAT AGCAAAAGAA ATGGGGCTCG ATAATTTGGC ACGTAGCCGC AAACAAGACA TCATCTTTGC TATTTTAAAA AAGCACGCCA AAAATGGTGA AGCCATTTAC GGCGACGGGG TACTTGAAGT GCTTCCTGAT GGATTTGGCT TCCTAAGATC TTCAGAAGGC TCTTATTTGG CTGGACCTGA TGACATCTAT GTAAGCCCAA GCCAAATCCG CCGCTTTAGC CTAAAAACAG GCGACTCTAT TGCCGGCACC ATCCGTCCAC CAAAAGATTC AGAACGTTAC TTTGCCTTAC TTAAAGTGGG TGAAATCAAC TTCGATACCC CAGATCGCTC ACGTCACAAA TTAATCTTCG AGAACTTAAC CCCACTATTC CCCACCGAGC AATTAAAGCT TGAGATGGGC AATGGTACAA CCGAAGACTT AACCGGACGT GTCATTGACT TAATCGCCCC TATTGGTAAA GGCCAGCGCT CCATTATCGT GGCGCCGCCC AAAGCCGGTA AAACCGTTCT ACTACAAACC ATCGCTCAAT CTATTACCCG CAATAACCCT GAATGCTATC TGATTGTACT ACTTATCGAT GAGCGCCCAG AGGAAGTGAC CGAAATGCAG CGTACTGTGC GCGGTGAAGT GGTTGCATCA ACCTTTGATG AACCGCCACA GCGTCACGTT CAAGTGGCTG AAATGGTCAT CGAAAAAGCC AAGCGCTTGG TAGAACATAA GCAAGATGTG GTGATTTTAT TAGATTCAAT TACCCGATTG GCTCGTGCCT ATAACACTGT GGTGCCCTCA TCAGGTAAAG TGTTGACTGG TGGTGTGGAT GCCAATGCTC TAGCCCAGCC CAAGCGCTTC TTTGGTGCGG CACGTAATAT CGAGGAAGGG GGCAGCTTAA CCATCATTTC AACTGCGCTG ATTGATACGG GCAGTAAAAT GGACAGCGTT ATCTTTGAAG AATTCAAAGG TACTGGTAAC CAAGAGATTA CCCTTGAGCG TGACTTAGCC GAAAAACGAG TATTCCCAGC CATTAATATC AAAAAATCAG GCACCCGCCG TGAGGAGCGC TTGCTTGACG AAGATACGCT GCGTAAAGTT TGGATTTTGC GTAAACTGCT ACAGCCTATG GATGGCGTAC AAGCCACTGA GTTCTTATTA GATCGCTTAA AAGAAGCCAA GACCAATGAC GACTTTTTCG ATCAAATGAA GCGCAAATCA CAAAACTAA
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Protein sequence | MTQQPSNETS MNLTELKKNS VAELLNIAKE MGLDNLARSR KQDIIFAILK KHAKNGEAIY GDGVLEVLPD GFGFLRSSEG SYLAGPDDIY VSPSQIRRFS LKTGDSIAGT IRPPKDSERY FALLKVGEIN FDTPDRSRHK LIFENLTPLF PTEQLKLEMG NGTTEDLTGR VIDLIAPIGK GQRSIIVAPP KAGKTVLLQT IAQSITRNNP ECYLIVLLID ERPEEVTEMQ RTVRGEVVAS TFDEPPQRHV QVAEMVIEKA KRLVEHKQDV VILLDSITRL ARAYNTVVPS SGKVLTGGVD ANALAQPKRF FGAARNIEEG GSLTIISTAL IDTGSKMDSV IFEEFKGTGN QEITLERDLA EKRVFPAINI KKSGTRREER LLDEDTLRKV WILRKLLQPM DGVQATEFLL DRLKEAKTND DFFDQMKRKS QN
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