| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1611 |
|---|
| Symbol | alaS |
|---|
| ID | 5206713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 1990599 |
|---|
| End bp | 1993310 |
|---|
| Gene Length | 2712 bp |
|---|
| Protein Length | 903 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640599833 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_001280502 |
|---|
| Protein GI | 148653409 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0248511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000135737 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACTCACT CTGCGCCCTC AAACCCTACT CAACTACCTT CTGATAAATT CTTACGCACA
GCCGATGTTC GTAAAGCGTT TATAGACTTC TTCGTTAGCA AGCAGCATAC CCATGTGCCC
TCCTCAAGCC TTGTGCCGTA CAACGACCCC ACTTTATTAT TTACCAATGC GGGTATGAAC
CAGTTCAAAG ACTGCTTTTT GGGCATCGAT AAACGTGACT ACACTCGAGC GGTCACCTCA
CAAAAATGTG TGCGTGCTGG CGGTAAACAC AATGACTTAG ATAACGTCGG TTATACAGCA
CGTCACCACA CCTTCTTTGA AATGTTGGGT AACTTCTCAT TTGGTGATTA TTTCAAAAAA
TCAGCCATCG CTTATGCTTG GGAATTTTTG ACCTCAAAAC AGTGGTTAGG CCTAGACGCT
GATAAACTTT ACGTGACCAT TTATGAAAGC GATGATGAAG CCTTTGATAT CTGGCACCAA
GACATTGGCT TAGCTGCCGA GCGCATCATT CGTATTGGGG ATAACAAGGG CGCCCCATAT
GCCTCAGACA ACTTCTGGGC CATGGGTGAT ACTGGCCCTT GTGGTCCTTG CTCTGAAGTA
TTCTATGACC ACGGCGAGCA TGTAGAAGGC GGCCTACCTG GCACGCCTGA AGAAGATGGC
GACCGCTATA TTGAAGTTTG GAACTGTGTA TTTATGCAGT TCAACCGTCA GCCAGATGGC
ACCATGGAGC CACTGCCTGC ACCTAGTGTC GATACCGGTA TGGGTCTTGA GCGTATCAGC
GCTATCTTGC AAGGCGTACA CAGCAACTAC GAAATCGACT TATTTGTTAA CTTAATCAAC
AGCGCTGCAG ACATCATTGG TATCAAAAAT GACAACCAAG CGTCTTTAAA AGTGGTGGCC
GATCACATCC GTGCGGTCAG CTTCTTAATT GCTGATGGCG TATTGCCAAG TAATGAAGGC
CGTGGTTATG TATTGCGCCG TATTATCCGC CGCGCTGTGC GTCATGGCAA CAAACTGGGC
GCAGAAGACA GCTTCTTCTA CAAAATGGTA GCGCCTTTGG TTAAAGAGAT GGGCGACGCT
TATCCACAGC TGGTTGAAAA ACAAGCCTTT ATCGAAAAAG CAATCGAAAA AGAAGAAGTG
CAATTTGCCA AAACCTTAGC TCAAGGTCTG CGCTTATTAG ACAGTGAACT TGAAAGCTTA
AAGTCAGGTG ATGTGCTCTC AGGCGAGGCG GCTTTTAAAC TGTATGACAC TTATGGCTTC
CCTGTTGACT TGACCGCAGA CATCACCCGT GAGCGCGGCA TTGGTATCGA TGAGGCCGGC
TTTGATGAGC AAATGAACAT TCAGCGTCAG CGTGCGCGTG ATGCAGGCAA ATTCGATGTG
GATTACTCAG CGGCCATTAA AGTTGAGACC CCTACTGAAT TTGTAGGCTA CGAGCAGCTT
GATGAAAAAG AGGTAAACAT CATCGGTCTG TATCAAGACG GCAAAGAGGT TGAGGTATTA
AACGAAGGTG ACGAAGGCGT TATTGTCTTA GACCGCACTC CATTCTACGC AGAAGGGGGT
GGTCAAGTGG GTGAAATGGG CGAGATTCGC ACGTCATCAG GGGTGTTCAA TGTTGAGGAC
ACCAAAAAAT CTGGCCAAGC CTTTATCCAT CACGGTGTGG TGAATATGGG ATCGCTACAA
AAGAGCCAAA CTGCTGACGC TCAAGTTGTC TCAGCAATTC GCTCAGCCAG TGCCCGTAAC
CATTCAGCCA CTCACCTGTT GCACGCAGCA CTGCGTAAAG TATTGGGAGA TAGCGTATCG
CAAAAAGGCT CACTGGTATC AAGCGAAATG TTACGCTTTG ACTTCTCATA CGACAATGCG
GTCTCTCAAA AAGATCTGGC CACCATTGAG CGCTTGGTCA ACGAGCAAAT CCAAGCCAAC
GTTGAGACCC ATATTGAGCT GATGAATATT GATGATGCGA TGGCCAAAGG GGCTGCTGCT
TTATTCGGTG AAAAATACGG TGAGACAGTA CGCGTATTGA CCATGGGCAC CACTGAGATT
GAAGATGGCA TACAAAAGCC CTTCTCTATT GAGCTTTGTG GTGGTCTGCA TGTGAAGCGT
ACCGGCGATA TTGGCCTGTT TAAAATCACC TCAGAGTCTG GTATCGCTGC CGGTATCCGC
CGTATCGAAG CCTTAACGGG TATGGGCGCT CTGCGTTATA TACAGCAAGC AGACAGCCAG
TTGACAGCCC TTGCTAATCA ATTAAAAGCC AAACGCCCTG AAGTGGCTGA CCGTGTACAG
ACCATGGCAG ACAAACAGCG TGAACTTGAA AAACAGATTG AGCGTTTGAA TCAAAAAATC
GCCAGTGCGC AAGCAGCAAC CTTGGTGGAT AATGTACAGA CCATCGCTGA TAAAAAAGTG
CTTATTGCAC AAGTGGCTGG TATCGATGGC AAAGCAATGC GCGGGCTTAT TGATGATATC
AAATCCAAGC TACAAGATAC CATTATCATC TTAGTCGGTG AAAAAGATGG CCAATTGGCA
CTTGCAGCCT CCGTAAGCAA GTCTTTAACT GGCGACATCA AAGCCGGTGA TATTATCCGT
CATTTAGCTG ATGAGCTTGA GGGTAAAGGC GGTGGTAAAC CAGACTATGC TCAAGGCGGC
GCGCCAAGTA GCGATAAACT GACCGGTGTG ATGCAAGCGC TGCCAAACTG GGTGGCAAGT
CAACTGAGCT AA
|
|---|
| Protein sequence | MTHSAPSNPT QLPSDKFLRT ADVRKAFIDF FVSKQHTHVP SSSLVPYNDP TLLFTNAGMN
QFKDCFLGID KRDYTRAVTS QKCVRAGGKH NDLDNVGYTA RHHTFFEMLG NFSFGDYFKK
SAIAYAWEFL TSKQWLGLDA DKLYVTIYES DDEAFDIWHQ DIGLAAERII RIGDNKGAPY
ASDNFWAMGD TGPCGPCSEV FYDHGEHVEG GLPGTPEEDG DRYIEVWNCV FMQFNRQPDG
TMEPLPAPSV DTGMGLERIS AILQGVHSNY EIDLFVNLIN SAADIIGIKN DNQASLKVVA
DHIRAVSFLI ADGVLPSNEG RGYVLRRIIR RAVRHGNKLG AEDSFFYKMV APLVKEMGDA
YPQLVEKQAF IEKAIEKEEV QFAKTLAQGL RLLDSELESL KSGDVLSGEA AFKLYDTYGF
PVDLTADITR ERGIGIDEAG FDEQMNIQRQ RARDAGKFDV DYSAAIKVET PTEFVGYEQL
DEKEVNIIGL YQDGKEVEVL NEGDEGVIVL DRTPFYAEGG GQVGEMGEIR TSSGVFNVED
TKKSGQAFIH HGVVNMGSLQ KSQTADAQVV SAIRSASARN HSATHLLHAA LRKVLGDSVS
QKGSLVSSEM LRFDFSYDNA VSQKDLATIE RLVNEQIQAN VETHIELMNI DDAMAKGAAA
LFGEKYGETV RVLTMGTTEI EDGIQKPFSI ELCGGLHVKR TGDIGLFKIT SESGIAAGIR
RIEALTGMGA LRYIQQADSQ LTALANQLKA KRPEVADRVQ TMADKQRELE KQIERLNQKI
ASAQAATLVD NVQTIADKKV LIAQVAGIDG KAMRGLIDDI KSKLQDTIII LVGEKDGQLA
LAASVSKSLT GDIKAGDIIR HLADELEGKG GGKPDYAQGG APSSDKLTGV MQALPNWVAS
QLS
|
|---|
| |