Gene PsycPRwf_1587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1587 
SymbolrpsA 
ID5205592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1953206 
End bp1954885 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content44% 
IMG OID640599809 
Product30S ribosomal protein S1 
Protein accessionYP_001280478 
Protein GI148653385 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0539] Ribosomal protein S1 
TIGRFAM ID[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000113977 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000457786 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAATCAT TTGCTGAACT ATTTGAAGCG AGTCTAGAAG AGCAAGGTCT TGATATTGAG 
CGTGGCTCAG TAATCAGCGG TGCTGTTGTA GCAATCGATA GCGATTGGAT TACAGTTGAC
ACTGGTTTGA AGTCTGAGGG TGTTGTTGCT CGTGAAGAGT TCTTAGACGA CAATGGCGAG
CTTGAAGTAG CAGTGGGCGA TAGCGTTGAT GTTGTTGTTG AAGCTGTTGA CAACGGTATG
GGTCAAACCC TACTGTCACG TGAAAAAGCA AAACGTGTAG AAACTTGGAA CGCGCTTGAG
AAACTATTTG AAGGCGATGA AATTGTAAAA GGTATCATCT CAAGCAAAGT TAAAGGCGGT
TTTACTGTTG ATGTAGGTTC AGTACGCGCT TTCTTACCAG GTTCATTAGT TGACGTTCGT
CCTATCCGTG ACACAACGCA CCTTGAAGGC AAAGAGCTAG AATTCAAAAT TATTAAACTA
GATCAAAAAC GTAACAACGT TGTTGTTAGC CGTAAAGCGG TTATGGAAGC TGAAAACTCA
GCTGAGCGTG AAGAGCTACT TAATAAGCTT GAAGAAGGTA TCGAAGTTGA AGGTATCGTT
AAGAACCTAA CTGACTACGG TGCATTCGTA GACTTAGGTG GTATCGACGG TCTACTACAC
ATCACTGATA TGGCATGGCG CCGCATCAAG CACCCATCAG AAGTGGTTGA AGTGGGTCAA
GACCTTAAAG TTAAAGTACT TAAGTTTGAC CGTGAGCGCA ACCGCGTAAG CCTAGGTCTT
AAGCAGCTAG GTACTGATCC TTGGGATAAC GTTGGCGGTA CTTACCCAGT AGGTAGCATC
GTTAAAGCTC GCGTAACTAA CCTAACTGAT TATGGTTGTT TCGCTGAGAT CTCTGACGGT
ATCGAAGGTC TGGTACACGT ATCAGAAATG GATCACACTA ACAAAAACAT CCACCCATCT
AAAGTCGTTC AGATTGGTGA CGAAGTTGAC GTTATGATCC TAGATATCGA TGAAGAGCGT
CGTCGTATCA GCCTAGGTAT CAAACAAACT CTACCAAACC CATGGGAAGA GTTTGATAAG
AAATATGACC GTGGCGATAA GCTAACGGGT ACTATCAAGT CAATCACTGA CTTTGGTATC
TTCATCGGTC TTGACGGTGG TATCGATGGT CTAGTTCACC TATCTGATAT CTCTTGGAAC
GAAGCTGGCG AAGAAGCTAT CCGTAACTAC AACAAAGGCG ACACTGTTGA AGCTATGGTT
CTATCAGTTG ACGCTGAAGC CAACCGCATC AGCCTAGGTA TCAAGCAGTT AAGCTCTGAT
CCATTCAACG AGTACCTAGT AGGTAACGAC CGTGGTTCAA TCGTAACTGG TACCGTTAAA
GACGTTGACG CTAAAGGCGC TACAATTACT TTAGCAGACG AAGTTGAAGG TTACTTACGC
GCATCAGAAA TCCAGCGTGA CAAAGTTGAA GATGCAACTA AGCATCTAAA CGTAGGCGAT
AGCGTTGAAG CGAAAATCAT CAGCGTTGAT CGTAAATCAC GTGGCATCAG CTTATCAATC
AAAGCGAAAG ATGAAGCTGA AGAGCGTCAA GCGATTAAAG AGCTTGGTAG CACTCAAGCT
GCTCCTGAAG CACAGCCAAA AACAATTGGT GACTTGATCA AAGAGCAAAT GCAAGACTAA
 
Protein sequence
MESFAELFEA SLEEQGLDIE RGSVISGAVV AIDSDWITVD TGLKSEGVVA REEFLDDNGE 
LEVAVGDSVD VVVEAVDNGM GQTLLSREKA KRVETWNALE KLFEGDEIVK GIISSKVKGG
FTVDVGSVRA FLPGSLVDVR PIRDTTHLEG KELEFKIIKL DQKRNNVVVS RKAVMEAENS
AEREELLNKL EEGIEVEGIV KNLTDYGAFV DLGGIDGLLH ITDMAWRRIK HPSEVVEVGQ
DLKVKVLKFD RERNRVSLGL KQLGTDPWDN VGGTYPVGSI VKARVTNLTD YGCFAEISDG
IEGLVHVSEM DHTNKNIHPS KVVQIGDEVD VMILDIDEER RRISLGIKQT LPNPWEEFDK
KYDRGDKLTG TIKSITDFGI FIGLDGGIDG LVHLSDISWN EAGEEAIRNY NKGDTVEAMV
LSVDAEANRI SLGIKQLSSD PFNEYLVGND RGSIVTGTVK DVDAKGATIT LADEVEGYLR
ASEIQRDKVE DATKHLNVGD SVEAKIISVD RKSRGISLSI KAKDEAEERQ AIKELGSTQA
APEAQPKTIG DLIKEQMQD