| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1573 |
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| Symbol | |
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| ID | 5204876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 1931164 |
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| End bp | 1932345 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640599795 |
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| Product | DNA uptake lipoprotein-like protein |
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| Protein accession | YP_001280464 |
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| Protein GI | 148653371 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000680472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00723568 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGCGTG CTTCAACTCC TTTTTTTACG GCATCAAATC AAAAACCATC TCACTCACCT
GCCAAAAACA AACTGGCTTT TGCCGTGCTG ACAGCAGGCC TATTAAGCTT AACTGGCTGT
CAGACACTAA AGAATATCAC CGGCAAAGAC AGTGACACAG TGGCCACCGC AGAGAAGACT
GATGCACAGT ACTACCAAGA AGCTGTAAAA GCTATGGACA AAGGCCGTTA CATTTATGCC
TCTGAACAGC TCACTGAACT TCGCACCTTC TATCCGACAG GCGCTTATGC TGAGCAGGCT
TTACTTGACT TGATGTACAG CCAATTCCAG ACTAAAGATT ATGAGCTTGC TGCCACCAGT
GCTGAGCAGT TTATCAAACT CTATCCACGC AACCCTCAGG TTGATTATGC TTACTATGTG
CGCGGTGTGG CCAACATGCA TGCCGGTACC AGCAGCCTCT TGAGCATTGC TCGTATGCAA
CAAGCGGACC GTGATACCTC TTATTATCGT TTGGCATTTA GCAACTTCCA AGATCTTTTA
TCGCGCTTTC CAAACAGCAG CTATGCCCCA GACGCCGCTC AGCGCATGAC ATATATCTAT
AATCAGTTTG CAGAAAGTGA GCTGAGCGCT GCACGTTGGT ACATCAAGCG TGAAGCTTAT
GTCGCTGCAG CCAACCGTGC CAAATGGGTA TTCCAGTACT ATCCTTTAAG CCAACAAATC
CCTGAGTCTA TCGCTATTTT GGCGTACAGT AATGAGCAGT TGGGCTTAAC TGACCTTGCC
AATCAGTACA AAACCCTATT ACAAATTAAC TATCCTGAGT GGCTGACCCG TGATGGTGGC
GTGCGTATTA ACAGCAACCG CACTGCCAGC TTATTAAACA AAATCACTTA TGGTAAATTA
GGCCGATCTA ATAATGGCGA TGATAGCACT GCAGCTACAG GTGAGTACAC AGGTCCTACT
AAGCAGCAGG TTATCCAGCA AGCTGCGCAA ATGCAATTGC CTAGCGATAA TGCGGCAACT
TCGCAAGCTG ACTTACCAAC CATTAATAGC AATCGCCGCG GTGTCAACTT AGGCCTTGGC
CTGCCAGATG ATGCAAGTGC ACAGCCTGTT CCAAGCCCGC AGCCACAAAC TCGCATTACA
AGCCCAAGCC AGATGTACCC TGAACAAATG GATCCACAAT AA
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| Protein sequence | MQRASTPFFT ASNQKPSHSP AKNKLAFAVL TAGLLSLTGC QTLKNITGKD SDTVATAEKT
DAQYYQEAVK AMDKGRYIYA SEQLTELRTF YPTGAYAEQA LLDLMYSQFQ TKDYELAATS
AEQFIKLYPR NPQVDYAYYV RGVANMHAGT SSLLSIARMQ QADRDTSYYR LAFSNFQDLL
SRFPNSSYAP DAAQRMTYIY NQFAESELSA ARWYIKREAY VAAANRAKWV FQYYPLSQQI
PESIAILAYS NEQLGLTDLA NQYKTLLQIN YPEWLTRDGG VRINSNRTAS LLNKITYGKL
GRSNNGDDST AATGEYTGPT KQQVIQQAAQ MQLPSDNAAT SQADLPTINS NRRGVNLGLG
LPDDASAQPV PSPQPQTRIT SPSQMYPEQM DPQ
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