| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1543 |
|---|
| Symbol | |
|---|
| ID | 5206445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 1888886 |
|---|
| End bp | 1889635 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640599761 |
|---|
| Product | AzlC family protein |
|---|
| Protein accession | YP_001280434 |
|---|
| Protein GI | 148653341 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) |
|---|
| TIGRFAM ID | [TIGR00346] 4-azaleucine resistance probable transporter AzlC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00537066 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTTCTC ATTCCAACAC CTCATCTATC GAACACCAGT CCCAACATGA TTGGGCACAA
GGATTCAAAA AAAGCATACC TGTCGCCATG GGGTACTTAC CTGCCGGGAT AGCCTTTGGC
GTATTAGCTC AAGTGGCAGG CCTTCCGTTT TGGGCCACCA TCATGTTAAG TGTGCTGCTT
TATGCCGGTG CCGCTCAATA TGCTTGCCTG CCTATGCTCA GTGCCGGTAT GCCCATTGGT
AGTATGGCCA CCAACATTGC CGCCATTAAT TTGCGTCACG TCTTTTATGG CATGCCCCTA
TTACAATCTT TGCCCGATAA CAAGCTGGCC AAAACTTACT GTCTGTTTGC GCTTACCGAC
GAGACCTTCT CCGTCATGAC CAGCTTGCCT CAACCCTTGC GAAAGACTTT AATGCTACCT
ATTAGCCTTT TTAACCAAAT CTGGTGGGTA GTAGCAGGTG GCATCGGCTT CATACTCGGC
GGCACCCTAA GCGACTTAAT CCCCAATTTG GATTTTGCGT TGGTCTGCTT ATTTGCCATC
TTGGCCTATG AACAGTTTCA AAGCATCAAA CGCTATTTTC CTATTGGCAT TGCCATCTTA
TCTTTAATCA TTGCCTCGCA ATTTACCAGC AGCTGGGTAC TGTTAATGGC CATTACGCTG
TGTATGTTAT TTATCTTAGT ACGCGGATTT TGGGCAGCGC AGCATCCCCC CGAAATAACC
CATAAAAAAG GAGATGGCCA TGAGCAGTAG
|
|---|
| Protein sequence | MTSHSNTSSI EHQSQHDWAQ GFKKSIPVAM GYLPAGIAFG VLAQVAGLPF WATIMLSVLL
YAGAAQYACL PMLSAGMPIG SMATNIAAIN LRHVFYGMPL LQSLPDNKLA KTYCLFALTD
ETFSVMTSLP QPLRKTLMLP ISLFNQIWWV VAGGIGFILG GTLSDLIPNL DFALVCLFAI
LAYEQFQSIK RYFPIGIAIL SLIIASQFTS SWVLLMAITL CMLFILVRGF WAAQHPPEIT
HKKGDGHEQ
|
|---|
| |