Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1499 |
Symbol | |
ID | 5205266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 1829561 |
End bp | 1830691 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640599719 |
Product | sugar efflux transporter |
Protein accession | YP_001280392 |
Protein GI | 148653299 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000671324 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.520287 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGCATCA GTGCTTTTGT TATGAATACC ACTGAATTCG TGCCTGTGGC TTTATTAAGC GATATTGCCA AAGACTTCTC CATCACCACC GCCGAAACCG GCTGGATGCT CACCTTATAT GCCTGGATTG TGGCGGCCAT GTCGCTGCCA TTAATGCTAC TCACCAGTAA GCTTGAACGC AAAAAGCTAT TACTGGGTAT TTTTGCATTA TTTATCGTCA GTCATGCGCT ATCCGTATTT GCTTGGAGTT TTAATGTTCT ATTAATTAGC CGAGTGGGTA TCGCTTTTTC TCATGCTATA TTCTGGTCAA TCACCGCAGC GATTGCCATT CGAGTGGCGC CTGAAGGCAA AAAAGCCTTC GCCTTAAGCG TGGTGGCAAC CGGCACTTCC TTGGCTATGG TACTGGGTGT TCCTTTGGGC CGAGTGATCG GACAGTGGTA TGGCTGGCGT ACTACTTTTG GCGGCATAGG TATTGTGGCA CTGGTGGTTT GCTTATTACA AGCTAAGCTA CTACCGTCAT TGCCTAGCAT GTTTAAAGGC TCTTTTAGAA AAGTGCCAGA ACTGCTAAAA AACCCACTTT TGGTCTGTCT GTACTTGCTT ATCTTTACCG TATTTACCGC CCACTATACC GCCTATTCAT ATATCGAACC TTTTATGCGT GAGATTGGCT CAATTAGTGA GAACTTGGCA ACCTTTGTAT TATTATTATT CGGGGGCGCA GGCATCATCG GTAGTATCTT ATTTAGCCGC TGGGGAGACA GACACAGCAC CTTATTGATG CTGGGCTCTA TCATAGTCAT GCTAGTGTCT ATGCTTACCT TGTTATTGGC GGTCAACTCT ATCTGGGCGC TTAGCCTTAA TGCCTTGTTA TGGGGCACGG CATTAATGCT GTTAATCATC TCTATGCAGG CCAAAGTACT TATGGTGGAT CTGCATGCCC AAGACATGCT GATGTCTATG TTCTCAGGCA TTATTAACTT AGGTATTGGT ACAGGCGCCT TATTTGGCGG TTATGCAGTG ACCCACATCT CGTTATCCAG TGTGGGCTAT GTTGGCGCGG TGATTAGTCT AATCGCCTTA TTGCTGGTAG CATTTATGAT TAAGCGCTTC CCCGCTTTAC GGGCATCTTA G
|
Protein sequence | MGISAFVMNT TEFVPVALLS DIAKDFSITT AETGWMLTLY AWIVAAMSLP LMLLTSKLER KKLLLGIFAL FIVSHALSVF AWSFNVLLIS RVGIAFSHAI FWSITAAIAI RVAPEGKKAF ALSVVATGTS LAMVLGVPLG RVIGQWYGWR TTFGGIGIVA LVVCLLQAKL LPSLPSMFKG SFRKVPELLK NPLLVCLYLL IFTVFTAHYT AYSYIEPFMR EIGSISENLA TFVLLLFGGA GIIGSILFSR WGDRHSTLLM LGSIIVMLVS MLTLLLAVNS IWALSLNALL WGTALMLLII SMQAKVLMVD LHAQDMLMSM FSGIINLGIG TGALFGGYAV THISLSSVGY VGAVISLIAL LLVAFMIKRF PALRAS
|
| |