| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1269 |
|---|
| Symbol | |
|---|
| ID | 5204656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 1562236 |
|---|
| End bp | 1564575 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640599488 |
|---|
| Product | malic enzyme |
|---|
| Protein accession | YP_001280166 |
|---|
| Protein GI | 148653073 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0280] Phosphotransacetylase
[COG0281] Malic enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.525931 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.614845 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA ATACTTCAAA TTCTATTCCT TCAGATCCTA ATTCCATTAA TGCAATGAAC
AAAGAGCAGT TTGAACAATC CGCTTTGCAT TATCATGAGC ACCCAACACC TGGTAAGATC
TCAGTTACCC CAACTAAGCA GATTGCTAAC CAACATGACT TAGCCTTGGC CTACTCTCCA
GGGGTAGCTG TTCCTTGCTT AGAAATTCAA CGAGATCCAA AGCTTGCGGC AAAATATACC
GCACGCAATA ATCTAGTTGG TGTTATTACC AATGGTACGG CCGTACTGGG TCTAGGTAAC
ATCGGTCCTT TGGCATCAAA ACCGGTTATG GAAGGTAAGG GCGTATTATT TAAACGCTTT
GCAGGTATCG ATGTATTTGA TATCGAAATT GATCAAAATG ACCCTGACAA ATTCATTGAA
GCTGTGGCCT CTTTAGAGCC TACCTTTGGT GGTATCAACC TTGAGGACAT CAAGGCGCCT
GAATGTTTCA AAATTGAGCG CGAACTACGT AAGCGCATGA ACATTCCTGT ATTCCATGAT
GACCAACATG GTACGTCAAT CATTGTGGGC GCCGCTTTAA TTAACGCTTT AAAACTGATC
GACAAAAAAA TTGAAGATAT CAAAGTGGTG TGTTCTGGTG CCGGTGCAGC CGCCATCTCA
TGCTTAGACT TAATTTGTGC GTTAGGCGTT CAACGCTCTA ACATCTTTGT ATCAGACTCA
CGCGGTATCA TCTCTACCAA ACGTGACAAC TTAGATGAAA GCAAGCAGCG CTTTGCTCGT
GACACAGAAG CCACAAGCCT TAATGATGTG ATGGACGATG TGGATATGTT CCTAGGCTTA
TCTATGCCAG GTATCTTAAC CCCTGACATG ATTAAGCGTA TGGCTCGTGA CCCTATTATC
TTTGCACTGG CTAACCCTAC TCCTGAAATT ATGCCTGAAG TTGCGCATGC TGTTCGTGAT
GACGTTATCA TGGCAACCGG TCGCTCAGAC TATCCTAACC AAGTAAATAA TGCCTTGTGC
TTCCCTTATA TCTTCCGTGG TGCACTAGAT GTGGGCGCAA CCACAGTAAA CGAAGAAATG
AAGATTGCTT GTGTGCACGC TATTGCAGCC ATGGCTCATG TAGAAGCCAC GCCACTGCAA
GGCCAAAAAT ATGTGGATAG CTCTAAGATC TTTGGCCGCG AGTATCTGAT CCCTGGCCCA
CTTGAGCCAA ACTTAATCGT TGAGATTGCC TCTGCGGTAG CAAAAGCGGC CATGGATTCG
GGTGTAGCCA CACTACCGAT TGATGACTTT AGTGCTTATC GTCAAAAACT TTCAGCCTTT
GTGTATAACT CAGCCTTTGT AATGAAGCCT TTGTTTGCGC GTGCCAAAGA AGATCCAAAA
CGTATTGTCT TCTGTGAAGG TGAAGATCCT GACGTACTGC GTGCAGTTCA GGTAGTGGTT
GATGAAGGCT TAGCTCAGCC AATCTTAGTG GGTCGCCCTG CAATTATTCA ATCACAGATC
AATGCCTTGA GCCTGCGTCT AAAAGCAGGT GAAAACATTG AAATTGTAAA CCAAGATGAT
GATCCACGCT ATAAAGACTA CTGGCAGACT TATTACGAGC AAAATAAACG CAAGGGCGTC
AGTATTGAAC TTGCTCGCCG TGATGTGCGC CGTAAGACCA CTCTAATCGG CTCTTTGTTG
GTCGAAAAAG GTGATGCTGA TGGTATGATC TGTGGTACTT TCAGTCACTA CAACTTGCAC
TTAAACTACG TAGAAAGAGT CATTGGCAAG CTTGAGGGTG TTAAAAACTT CTACTCAATG
AATGCCGTAT TGATGCAAAA CCGCAACTTG TTTATTGCCG ATACCTATAT TCATGAAGAC
CCAACCGCTG AGCAGTTGGC AGAAATGACA GTACTGGCTG TAGATCAAAT GCGCCGCTTT
GGCATTACTC CACGTGTTGC TCTGCTTTCA CACTCAAACT TCGGTACCTC TAACCGTGAT
AGCGCCATTA AAATGCGCAA AGTGTATGAG CTGCTAAATG AAATGAATGT GGACTTTGAG
TTTGATGGCG AAATGCATGG TGATTCAGCA CTAGATGACC GTATCCGTAA TCAAGACTTC
CCACACAGTG TGTTAAAAGG CCCAGCTAAC TTGTTGATTA TGCCAACCCT TGATGCCGCT
AACATTGCCT TTAATTTGTT AAAGACAGCT ACAGGTAGTG CCACCATTGG TCCAATCCTA
TTAGGTGCCA GCAAGCCTGT ACATATCTTA ACGCCTTCTG CTACTGCTCG TCGTATTGTC
AACATGACTG CCCTAGCGGT TACAGAAGCT CAAGATATCG AAGCCAATGC AAAAAACTAA
|
|---|
| Protein sequence | MSDNTSNSIP SDPNSINAMN KEQFEQSALH YHEHPTPGKI SVTPTKQIAN QHDLALAYSP
GVAVPCLEIQ RDPKLAAKYT ARNNLVGVIT NGTAVLGLGN IGPLASKPVM EGKGVLFKRF
AGIDVFDIEI DQNDPDKFIE AVASLEPTFG GINLEDIKAP ECFKIERELR KRMNIPVFHD
DQHGTSIIVG AALINALKLI DKKIEDIKVV CSGAGAAAIS CLDLICALGV QRSNIFVSDS
RGIISTKRDN LDESKQRFAR DTEATSLNDV MDDVDMFLGL SMPGILTPDM IKRMARDPII
FALANPTPEI MPEVAHAVRD DVIMATGRSD YPNQVNNALC FPYIFRGALD VGATTVNEEM
KIACVHAIAA MAHVEATPLQ GQKYVDSSKI FGREYLIPGP LEPNLIVEIA SAVAKAAMDS
GVATLPIDDF SAYRQKLSAF VYNSAFVMKP LFARAKEDPK RIVFCEGEDP DVLRAVQVVV
DEGLAQPILV GRPAIIQSQI NALSLRLKAG ENIEIVNQDD DPRYKDYWQT YYEQNKRKGV
SIELARRDVR RKTTLIGSLL VEKGDADGMI CGTFSHYNLH LNYVERVIGK LEGVKNFYSM
NAVLMQNRNL FIADTYIHED PTAEQLAEMT VLAVDQMRRF GITPRVALLS HSNFGTSNRD
SAIKMRKVYE LLNEMNVDFE FDGEMHGDSA LDDRIRNQDF PHSVLKGPAN LLIMPTLDAA
NIAFNLLKTA TGSATIGPIL LGASKPVHIL TPSATARRIV NMTALAVTEA QDIEANAKN
|
|---|
| |