| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1232 |
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| Symbol | |
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| ID | 5205875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 1514141 |
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| End bp | 1517752 |
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| Gene Length | 3612 bp |
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| Protein Length | 1203 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640599452 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001280130 |
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| Protein GI | 148653037 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.650603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTG TACATCTTGG TATTCACAGC GAATTTTCTA TTACGGACTC TATTATCCGT
ATCAAACCTA TGGTCAAAGC GGCCGCTGCT GATGGACAGA TGGCACTGGC ATTGACAGAT
TTATCGAATT TGTATGCCAC TGTTAAATTC TATCGTGCCT GCCTAGATGC GGCGATAAAG
CCCATTATTG GTGCTGAGAT TATTCTTGAT GATGAACATA CTCGTTTAAC CTTGCTTGCC
ATGAATAACG AGGGTTATCA AAGCATTACC CGTATTGTCT CGCTAGGCTT CACTGATGGC
CGCATGAATC CTGATAACCG AGGAACACCT ATTGTCAATA AAGCGCATTT GCTAGATAAC
AGCGCTGGGG TTATTGTACT ATTCACCGAA AAATCTGATG TGGGCCAAGC TTTATTAGGC
GCAAACCCAG AGCGCGGACA TCAATTAATT AGCGAGTATC AAGCAGTATT CGGTGATCGC
CTGTATTTTG CGATAAAGCG CACCAAACGG GCTTTGGAAG ATACTTTTAT TGAACAGGCC
ATATTGGCAG GTCAGCGTCA TGGTATTGCC ACAGTGGCCC ATAATGACGT GCGCTTTTTG
GAAGAAGAGG ACTTTGATGC TCACGAAGCT CGAGTGTGTA TTGCCTCCTC CCATGTATTG
GCTGATCCCA ATAGGCCACA CGACTACTCA AGTGAACAGT ATCTAAAGAC TCAAGCCCAG
ATGACTGAGC TATTTTCCGA TATCCCTCAG GTGGTTCAAA ACACGGTCAT TCTAGCGCAG
CGCTGTAACG TTACTTTGAC ACTGGGCATA AACGTATTGC CTGAATTTCC AGTACCAGAA
GGTGAGACCA TTGAGTCTTT CTTCAGAGCT GAGTCGCAGC GCGGGCTGGA GGCACGTTTG
GATAAGTTAT ATCCAGTAAG CGAGCGTGAT GAGACGTGGC CTGAGATTCG CAGACCCTAT
GATGAGCGCT TGGAGCATGA GCTTAATATT ATCTTGGAGA TGGGATTTCC GGGCTACTTC
TTAATCGTTA TGGACTTTAT TCGCTGGGCC AAGGCCAATG GCGTGCCTGT CGGTCCAGGG
CGTGGTTCGG GCGCCGGCTC GTTAGTGGCC TACGCCTTGA ACATCACCGA CCTTGATCCG
CTGCATTATG ATCTGCTGTT TGAGCGCTTC TTAAACCCCG AGCGTGTGTC CATGCCTGAC
TTTGATATCG ACTTTTGTAT TGAAGGGCGT GACCGCGTCA TTGAATACGT GGCCAGTCAA
TATGGCCGTG AGGCGGTGTC GCAGATTATC ACCTTTGGTA CCATGGCGGC TAAAGCTGTG
GTGCGAGACG TGGCTCGTGT CCAAAGTAAA TCTTATGGCT TGGCTGATAA AATCTCCAAG
CTTATTCCAA AGACGCCCGG TATCTCTTTA AAAGACGCCC TACTCGAGGA GCCTCAGCTT
AAGGATTTGC TGTCTAATCC GGACAACATG GACTATGAAG ATGCCAATGA AATCTGGGAG
ATGGCCATTA AGCTTGAGGG CATCACTCGT AACGTCGGTA AGCATGCCGG TGGGGTACTA
ATCGCCCCAA ACAAAATCAC CGACTTTAGT GCGATTTATT GTGATGAAGA AGGTCACCGG
GTTAGCCAAT TCGACAAAGA TGACGTAGAG TCTGTCGGCC TAGTTAAGTT CGACTTCTTA
GGTCTACGCA ACCTAACGGT TATCAATGCC GCTGTCAAAA ACATCAACGA GCGCCGTGCT
CGTGAGAATA AGCCCGCTTT AGAGCTTGAA GACTTACCGC TTGATGATAC AAATGCCTAT
AAGCTGCTAC AAGACGCCAA AACCACAGCG GTGTTCCAGC TAGAGAGCTC AGGTATGAAA
AAATACCTGG CCAAGCTGCA GCCGACCAAC ATCGAAGACG TTATCGCCAT GTGTGCGTTG
TATCGCCCCG GCCCATTAGA CGCTGGCATG GTAGAGATGT ATATTGACCG CAAACATGGG
CGTGAAGAGG TGGTGTATGA TCACCCAAAC CTTGAGCCGA TTTTAGAAAA CACCAATGGG
GTTATTGTCT ACCAAGAGCA GGTAATGCAA ATCTCACAGG TCATGGCTGG CTATAGCTTA
GGCGGCGCTG ACATGCTGCG CCGTGCCATG GGTAAAAAGA AACCTGAAGA GATGGCCAAA
CAGCGTGACA TTTTTGTGAC CGGTGCCACA GCACAAGGTA TTGACCCTGT CATCTCTGGC
GGTGTGTTTG ATTTGATGGA AAAATTCGCC GGTTACGGCT TTAACAAGTC GCACTCAGCC
GCTTACGGGG TACTTGCCTA TCAAACGGCT TATCTCAAAT ATTACTACCC AGCTGAGTTT
ATGGCAGCAG TCCTTACCTC AGATATGAAC AACACCGATA ACGTGGTGTT CTTCATTAAC
GATTGCCGTG AAAACTTCGA TCTTAGCGTC GATAACCCCT CAGTAAATCG AAGTGAATGG
CACTTTGTGG CCGATACTCC CACCAACATC ATCTATGGTT TAGGTGCCAT TAAAGGCGTC
GGTGAAGGCG CGGTAGATTC TATCGTGCAA GCACGTCGCC AAGGGGGTAA GTTTACAGAT
CTTTATGATT TTTGCCGCCG AGTAGATATC AAAAAGGTAA ACAAGCGCAC CTTAGAGGCG
TTAATTAAAT CTGGCTGCTT TGATGACTTT GCCATTACCC AGCGCCCAGA TTTAGCAGCA
GATGAGCGCC ATCAGATTCG CGGTGCGTTA ATGGCACAGC TGCCAAGTGC AGTACAAGCG
GCGGAACAAG AGCGTCAAAA TAACGAAATG GGCATGATGG ACTTATTCAG TGAAGTCGAT
AATGCCACCA CCGCACCGCC ACTGCCTACA GATAGCGGTC TGATTTGGGG AGACAAGCAC
CGTCTCAAAG CTGAAAAAGA CACCCTAGGG CTTTATTTAA CCGGTCATCC CCTAGATCAA
TACCGCAAAG AGGTGGCTGT TTATACCTCA AATGCCCGTT TAGATAGCTT GGCAGATACT
GGCTATAACG GCAGTACTTT TTTTGCCGGT TTGATTATGG ACATCGCAAA CTTTGGTAAC
CGCTGCGTCA TTACACTTGA TGATGGCACA GCCCGTCTTG AGGTTAGCTG CTATGCTGAG
CGTTTTAACC GCATTAAAGA CAAGCTCAAG GTCGATGAGG TAATTGTTAT CAAAGGCGGT
ATTCGAGACC GTGATGGCCG GTTATTCGCC CGTTTAGACA ATGCTTATAC CCTGCTTGAA
TGCCGTCAAC GTTGGGTAAA AAAGATAAGT ATCAAGATTC ACAGCCAAAA CACCTTGTTG
CTTGACTCAT TACAGCCCTT ACTAAAGCCT GCTCAGAGTC ATCTCATTCC AAATCATCAA
AGCCCCGCCT TCGATGAAGA CAGTGATGAC GGCAATTCAA TGGAAGCTTA CTATAACGGT
AACTCGGATA TGACAGCGGC TCCGGTAGCA CAAAACGATG GCTGTATTCC TATCGCTCTA
AACATCTATA CCGACTTTGC CATTGCCAAT GTCAGTTTAA ATGACAACTG GCGTCTGTAC
CCCACAGATG ACAATTTAAT ACAGCTGGGC ACCTTAGTAC CCCAGGACAA CTTGTATTTC
CATTACCAGT AG
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| Protein sequence | MAFVHLGIHS EFSITDSIIR IKPMVKAAAA DGQMALALTD LSNLYATVKF YRACLDAAIK
PIIGAEIILD DEHTRLTLLA MNNEGYQSIT RIVSLGFTDG RMNPDNRGTP IVNKAHLLDN
SAGVIVLFTE KSDVGQALLG ANPERGHQLI SEYQAVFGDR LYFAIKRTKR ALEDTFIEQA
ILAGQRHGIA TVAHNDVRFL EEEDFDAHEA RVCIASSHVL ADPNRPHDYS SEQYLKTQAQ
MTELFSDIPQ VVQNTVILAQ RCNVTLTLGI NVLPEFPVPE GETIESFFRA ESQRGLEARL
DKLYPVSERD ETWPEIRRPY DERLEHELNI ILEMGFPGYF LIVMDFIRWA KANGVPVGPG
RGSGAGSLVA YALNITDLDP LHYDLLFERF LNPERVSMPD FDIDFCIEGR DRVIEYVASQ
YGREAVSQII TFGTMAAKAV VRDVARVQSK SYGLADKISK LIPKTPGISL KDALLEEPQL
KDLLSNPDNM DYEDANEIWE MAIKLEGITR NVGKHAGGVL IAPNKITDFS AIYCDEEGHR
VSQFDKDDVE SVGLVKFDFL GLRNLTVINA AVKNINERRA RENKPALELE DLPLDDTNAY
KLLQDAKTTA VFQLESSGMK KYLAKLQPTN IEDVIAMCAL YRPGPLDAGM VEMYIDRKHG
REEVVYDHPN LEPILENTNG VIVYQEQVMQ ISQVMAGYSL GGADMLRRAM GKKKPEEMAK
QRDIFVTGAT AQGIDPVISG GVFDLMEKFA GYGFNKSHSA AYGVLAYQTA YLKYYYPAEF
MAAVLTSDMN NTDNVVFFIN DCRENFDLSV DNPSVNRSEW HFVADTPTNI IYGLGAIKGV
GEGAVDSIVQ ARRQGGKFTD LYDFCRRVDI KKVNKRTLEA LIKSGCFDDF AITQRPDLAA
DERHQIRGAL MAQLPSAVQA AEQERQNNEM GMMDLFSEVD NATTAPPLPT DSGLIWGDKH
RLKAEKDTLG LYLTGHPLDQ YRKEVAVYTS NARLDSLADT GYNGSTFFAG LIMDIANFGN
RCVITLDDGT ARLEVSCYAE RFNRIKDKLK VDEVIVIKGG IRDRDGRLFA RLDNAYTLLE
CRQRWVKKIS IKIHSQNTLL LDSLQPLLKP AQSHLIPNHQ SPAFDEDSDD GNSMEAYYNG
NSDMTAAPVA QNDGCIPIAL NIYTDFAIAN VSLNDNWRLY PTDDNLIQLG TLVPQDNLYF
HYQ
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