| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1149 |
|---|
| Symbol | |
|---|
| ID | 5206528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1405630 |
|---|
| End bp | 1407129 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640599369 |
|---|
| Product | L-serine dehydratase 1 |
|---|
| Protein accession | YP_001280048 |
|---|
| Protein GI | 148652955 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGCT TATTTGATAT GTTTAAAATT GGGATTGGCC CCTCAAGCTC CCATACCATG
GGGCCTATGG TCGCAGCTGG CATGTTTATC GATGAATTAA AACAGCAATT TAGATTGCAA
GACATCGTGC GCCTACAAGT GGATCTCTAT GGCTCACTGG CTTCGACCGG TAAGGGGCAC
GCCACAGATA CTGCCTGTAT CTTAGGACTG TTGGGGTTTA AGGCCAACAA AATCGACACC
ACCAAAGTGA GCGAGTATTT AGCGCCCGTA CTACAGCAGC ACACGCTGAA TCTAAATGGT
GAGCACACCC TAAGCTTTGA TTACGATCAT GACATCATTT GGCATCCGCG CAACAGCTTG
CCGCATCATC CCAATGGCCT GAGCTTTACT GCGTATCATA ACAGCGGTGA GCAGCTGTCT
AAGACTTACT ACTCTATCGG GGGCGGCTTT GTGGCCACCG AAGAGGAGTT TGATACTCCC
GCTAAGGCGC AGGCAGGTGA GACGGAAGCT GAAGCTGCCC ATGCCGCTGA CAACGTGGCC
ATTACCAGTG ATCGCTCAGT GCCCTATCCT TTTGGCAATG GCAATGAGCT ACTAGAGCAG
TGTGCTAAGC ACAATCTTAG TATCAGTCAG GTCATGATGG CCAATGAGCT GTCTATCCGT
GATAAAGACA CCATCTATGC TTACTTAGAT GAGGTCTGGG AAGTCATGCA GCAGTGCGTC
AGAAACGGCT GTAAAGGAGA GGGTATCTTG CCGGGCGGGT TAAAAGTAAA GCGCCGAGCC
AAAGACATGT ACCGTCAGCT GTTAAATGAG CTTGAAAGTC CCAAAAAAGC CAGTGATAAG
CTCATGGCCA TGGACTGGGT AGATCTTTTT GCTCTCGCGG TCAATGAAGA AAATGCCAAT
GGCGGGCGTG TGGTCACTGC CCCCACCAAT GGTGCAGCTG GTATTATCCC TGCTGTATTA
CACTATTACC GCGACTTTTT ACCCAGCTAC AGCCCGCAAG GGGTGCGTGA GTTTTTGTTG
ACGGCCGCCG CTATTGGTAC CATTATCAAG CAAAACGCCT CAATCTCCGG TGCCGAGGTG
GGCTGTCAAG GTGAAGTAGG CTCAGCCTGC TCTATGGCGG CAGCCGGTCT GGCCCATGTG
ATGAATCTAT CCCCTGAGCA GTGTGCCAAC GCCGCTGAGA TTGGCATTGA GCATAATTTA
GGCCTAACTT GCGACCCTAT TGGCGGGCTG GTGCAAGTGC CTTGTATTGA ACGCAATGCG
ATGGGTGCGG TTAAGGCCAT TAACGCGGCA AGATTGGCCA GCCGCGGTGA CGGCAAGCAT
CATGTGTCGC TAGATAAGGC CATTGCTACC ATGAAAGCTA CTGGCGCTGA TATGATGGAT
AAATATAAAG AGACAGCCAT GGGCGGGCTA GCGGTGCACG CTTACAACCC CCAAGACAGC
AGCGTTGATG GTTCACGCAT TGAGATGGTT GAGGTCGGTG TGGGTTATCC GCAGTGCTAG
|
|---|
| Protein sequence | MISLFDMFKI GIGPSSSHTM GPMVAAGMFI DELKQQFRLQ DIVRLQVDLY GSLASTGKGH
ATDTACILGL LGFKANKIDT TKVSEYLAPV LQQHTLNLNG EHTLSFDYDH DIIWHPRNSL
PHHPNGLSFT AYHNSGEQLS KTYYSIGGGF VATEEEFDTP AKAQAGETEA EAAHAADNVA
ITSDRSVPYP FGNGNELLEQ CAKHNLSISQ VMMANELSIR DKDTIYAYLD EVWEVMQQCV
RNGCKGEGIL PGGLKVKRRA KDMYRQLLNE LESPKKASDK LMAMDWVDLF ALAVNEENAN
GGRVVTAPTN GAAGIIPAVL HYYRDFLPSY SPQGVREFLL TAAAIGTIIK QNASISGAEV
GCQGEVGSAC SMAAAGLAHV MNLSPEQCAN AAEIGIEHNL GLTCDPIGGL VQVPCIERNA
MGAVKAINAA RLASRGDGKH HVSLDKAIAT MKATGADMMD KYKETAMGGL AVHAYNPQDS
SVDGSRIEMV EVGVGYPQC
|
|---|
| |