| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0961 |
|---|
| Symbol | mnmA |
|---|
| ID | 5204912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1147962 |
|---|
| End bp | 1149158 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640599180 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_001279861 |
|---|
| Protein GI | 148652768 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000522791 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAT CTACTGGTTT TGATAATAAC GCCTATAATT TGCCCGCCCT ACGCCTAAGC
GATGTGCCCA ATCCTGCCCA GACTCGTGTG GTCGTAGGCA TGTCTGGCGG TGTGGACTCT
TCTGTTTCTG CGGTACTGCT ACAGCAAGCT GGCTTTCAGG TAGAAGGCTT GTTTATGAAA
AACTGGGAAG AAGATGACGG CACCGAATAC TGCACCGCTA TGGAAGATTT GGCCGATGCG
CAAGCGGTCT GCGACAAAAT AGGCATCAAT TTACATACGG CTAACTTTGC GATGGAATAT
TGGGACCGTG TATTTGAGCA TTTCTTAGCC GAATATCAAG CCGGCCGTAC CCCAAACCCA
GATATTCTGT GTAATAAAGA AATCAAGTTC AAAGCCTTCT TAGACTACGC TGTGACCTTA
GGCGCAGATT ACATTGCCAC CGGTCATTAC ACCCGCCGCA GTGTCAATTA CACCCGTGAA
GATGGGCTTG AAGTGGCGCA TCTGATGCGT GGGCTTGATA ACAACAAAGA CCAAAGCTAT
TTCTTACATG CAGTGGGCGG CGACAAGATT GCTAAGACAT TATTCCCAGT GGGCGAGTTA
GAGAAGCCTG AGGTACGCCG TATTGCTGAG GAGCATGATC TGATTACGGC TAAGAAAAAA
GACTCAACCG GTATTTGCTT TATCGGTGAG CGCCGCTTTA AAGACTTCTT GCAGCAATAC
TTGCCGGCCA AGCCGGGCAA TATCGTGACC GATGATGGCA TTACTATTGG CAAGCACGAT
GGCCTCATGT ACTACACCTT AGGTCAGCGC GGCGGCATTG GTATTGGCGG GGTCAAAGAC
CGTCCTGAAG AGCCTTGGTT TGTGCTACAA AAAGACTTGA GTAACAACGA GCTGATTGTC
GGTCAAGGTC ATGACCACCC GATGCTGCTT AGCCAACGCC TAACCGCTTA TAAGCTTGAC
TGGGTTGAGC GTATCGCGCC AGCTGCTATC TTTAGTGAGC AAGGCCTCAA ATGCATGGCC
AAAACTCGGT ATCGTCAGCC CGATCAAAGC TGCACGGTAT TTGCTGACTC TGATGATGGC
AGCCGCGTAA AAGTAATATT TGATGAGCCG CAGCGTGCGG TCACACCAGG TCAGTCTGCG
GTATTTTATA TCGGCGAGGT GTGCTTAGGC GGCGGTGTGA TTGAGTCGTT TGAGTAA
|
|---|
| Protein sequence | MTTSTGFDNN AYNLPALRLS DVPNPAQTRV VVGMSGGVDS SVSAVLLQQA GFQVEGLFMK
NWEEDDGTEY CTAMEDLADA QAVCDKIGIN LHTANFAMEY WDRVFEHFLA EYQAGRTPNP
DILCNKEIKF KAFLDYAVTL GADYIATGHY TRRSVNYTRE DGLEVAHLMR GLDNNKDQSY
FLHAVGGDKI AKTLFPVGEL EKPEVRRIAE EHDLITAKKK DSTGICFIGE RRFKDFLQQY
LPAKPGNIVT DDGITIGKHD GLMYYTLGQR GGIGIGGVKD RPEEPWFVLQ KDLSNNELIV
GQGHDHPMLL SQRLTAYKLD WVERIAPAAI FSEQGLKCMA KTRYRQPDQS CTVFADSDDG
SRVKVIFDEP QRAVTPGQSA VFYIGEVCLG GGVIESFE
|
|---|
| |