| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0887 |
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| Symbol | |
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| ID | 5204944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1051911 |
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| End bp | 1053671 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640599106 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001279787 |
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| Protein GI | 148652694 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000421492 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000263613 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGACCT CTGTAACCTT AATTCCTGAT TCTAAAAGTC GAAGCGTGAG TGGTTCTGTT
ATGCATACCC GAAAAAAATG GTCCCGTTTG TTTGGTCTAT CTGCTTTGAC AGTCGCAATC
AGCGCCTGTC AAAGTGTTCC ACTGGCCGAC ACAAGCCCCA CAGTAGCCCG CCCCAATATT
CCTTTGAATC CGGGCGAAAA CTATGAGCTT TATGGCAACA ACCAAGTGCC TTCAAGCCTA
GCGGCTGTAC GTTGGCAGAG CTTTTATTCT GACCCTAAGC TAAAAGCGCT TATCCAAATG
GGTCTGGATA ATAACAAAGA TGTTAAGCAA GCTGTCCTAG CCATTCAGAA AGCCCAAGCT
CAGTACCGCA TTACTGACAG TAATGATGCG CCTAACTTAG GTTTGAATGG AGATTACTCA
TACGGGGCAA GTAATGCTAG AGACCGTAAC CCTAGTGACA GCTTTAATGT AGGCCTAGGT
ATGGCGGCTT ATGAGCTTGA TTTTTGGGGT AAAGTGGCAA GCTTAAAAGA CCAAGCGCTG
CAAAATTACC TCAGCACCAC AGCCGCACGT GACACCGCTC AGGTCAGCTT GATTGCCAAT
ATTGCCAAAA GCTATGTCAA TTTAAGCTAT CAGCAAAAGC AGCTAGAGCT TGCCATTAGT
ACATTGCAGA CTCGAGAAGA GTCGCTACGC ATTACGCAAG CCCGCTTGGC AGCTGGCATT
GACTCAAAAG CACCTTCGCT GCAAGCAGCT GCCTCTGCTG AGACGGCTCG TATTGCTGCA
CTAAATGCTC AAAGCGGCGT ATTAAGAGCC AAAAATGCTT TGAAATTCTT GGTGGGTACC
CAGATTAGCG AAGACATGAT GCCAGATCCC GCTATTCCTT CGATTACTTC AAGCCAAGTA
TTAAGCGCAG GCTTGCCAAG TGACTTATTA CGCTACCGCC CTGATGTCTT GCAAGCTGAA
TACAATCTAA AAGCGGCGGG GGCTAATATT GATGTGGCCC GAGCTGCCTA CTACCCTTCT
ATTAGTTTGA CAGGCAACTT AGGCTACTCA AGTAGCGACT TATCTGACTT ATTTAAGAGC
AGTGCTGGCA GTTGGTCGTT TGGACCCTCT ATTAGATTGC CTTTATTTGA TGCCGGTCAG
CGTGATGCCA ACTATGAAGT GGCTCAAATT GAGCGTGATC AAGCCGTTGC CAATTACGAA
AGTACAGTAG AGGCGGCGTT TAAAGAGGTC AACGATGTAC TGGCAGATCG AGCGACATTA
GATGCCAGAA CTCAAGCAGA ATATCGCTTA CAAGAGAACT ATCAAGGTTT ATTTGATATC
TCTGAAGCCC GCTTTAAGGC GCAAGTAGAT GACTACTTAG CGGTACTAGA TGCTCAGCGC
TCACTGTTCT CCACTCAGCA GTCTATTTTG AACCTTGAGC AAGAGCGTCT AAATAACCAG
ATTGAGCTGT ATCAAGTGTT AGGTGGCGGT GCCAACTTAG GTGCGGTGGC AGTACCTACC
CCTAAATATC AAAACCTGGT CAATGTCCTT GATAATAAGA CCAATAAGCA AAAAGCGGTC
AATGCTGTTG AAGCCAGTAA AGGGCCAAGA ATTGTCACCG CCCAAGAAGC TTACCTGCTT
GAGCAGCAAA AGCCTGTGAA AGTTGTGGAA CAAAAACAAG CAACCCCAGT GGATATAAAC
AACGACAACA ACACCGATGC TTATATCTCT GTGGTAGAAA CCACCACTGA GCCTGCTGAC
TCTAAAGTGG TTCAGCATTA G
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| Protein sequence | MTTSVTLIPD SKSRSVSGSV MHTRKKWSRL FGLSALTVAI SACQSVPLAD TSPTVARPNI
PLNPGENYEL YGNNQVPSSL AAVRWQSFYS DPKLKALIQM GLDNNKDVKQ AVLAIQKAQA
QYRITDSNDA PNLGLNGDYS YGASNARDRN PSDSFNVGLG MAAYELDFWG KVASLKDQAL
QNYLSTTAAR DTAQVSLIAN IAKSYVNLSY QQKQLELAIS TLQTREESLR ITQARLAAGI
DSKAPSLQAA ASAETARIAA LNAQSGVLRA KNALKFLVGT QISEDMMPDP AIPSITSSQV
LSAGLPSDLL RYRPDVLQAE YNLKAAGANI DVARAAYYPS ISLTGNLGYS SSDLSDLFKS
SAGSWSFGPS IRLPLFDAGQ RDANYEVAQI ERDQAVANYE STVEAAFKEV NDVLADRATL
DARTQAEYRL QENYQGLFDI SEARFKAQVD DYLAVLDAQR SLFSTQQSIL NLEQERLNNQ
IELYQVLGGG ANLGAVAVPT PKYQNLVNVL DNKTNKQKAV NAVEASKGPR IVTAQEAYLL
EQQKPVKVVE QKQATPVDIN NDNNTDAYIS VVETTTEPAD SKVVQH
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