| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0642 |
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| Symbol | |
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| ID | 5206329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 771864 |
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| End bp | 773072 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640598858 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001279547 |
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| Protein GI | 148652454 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.39661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACACAA GCGACCCATC GAATACCGCC ACTGACCATC AGCAACAAAC CTTAGAGCTT
AGTATTGAGC TGATGCGCCG AGACTCTGTG ACACCTCACG ATAAAGGCTG TCAGGAGGTA
TTGGTTGAGC GTTTAAGCCC GCTTGGATTT GTGCATGAGT TTATGTATTT TGGTGATGAG
CAAGCCAGCG GACGCGATGC ACAGGTAAAA AACCTATGGG CCAGACGTGG CAACCAAGAC
CCTGTGGTGT GCTTCGCCGG CCATACCGAT GTGGTGCCTA CCGGTAATCC GGACAATTGG
CGCATTGCGC CTTTTGACGC CAAAGTACAT GATGGCTACC TTTGGGGACG TGGTGCGGCT
GATATGAAAA CCGGTATTGC CGCCTTTACT GTCGCTACTG AGCGCTTTGT CAAAAACCAT
CCTGACCATA ATGGCTCAAT CGCCATGCTG ATTACCTCAG ATGAAGAAGG CCCATCAATT
AATGGTACGG TTAAAGTGAT TGAGGTTTTA GAAGCACGAA ATGAGAAAAT AACCTATTGC
TTAGTCGGTG AGCCATCAAG TACAGACAGC TTAGGTGATG TGATCAAAAA TGGGCGCCGT
GGCTCGTTGG GCGGTATTTT AACGGTGACC GGCAAACAAG GCCATGTCGC CTACCCTCAT
TTAGCGGTTA ATCCAATTCA CGCTTTATTG CCTGCTTTGG CTGAGTTTAG CGTTACTGAA
TGGGACAAAG GCAATGACTT TTTCCCAGCA ACGTCGATGC AAATCTCAAA CATCAACGGT
GGTACTGGTG CAAACAATGT GATTCCAGAA ACCGTTGAAG TGGTGTTTAA CTTTAGATTC
TCGACTGAAA CCACCGAAGA AGAATTACGC GCCAAAACCC ATGAAATCTT GGACAAGCAC
TTTGCCAATA CTGAGGCTAC CTATGAGATT GACTGGAAAT TATCAGGCCA TCCGTTCTTA
ACTGCTGAAG GCAAGCTGGT AGATGCGTGT AAAGTAGCCA TTAAAGACAT TACCGGTACC
GACACTCAGT TATCGACCTC GGGCGGTACT TCTGACGGCC GCTTTATTGC GCCAACTGGT
GCGCAAGTGG TCGAGCTTGG CGTGCGTAAT GCGACCATTC ATCAGGTGGA TGAGCGTGTG
GAGATTGATG ATATTGGTAA ATTGGCTCAG ATTTATGAGC GTATGCTAGA AGAGTTGTTG
CTGGGTTAG
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| Protein sequence | MHTSDPSNTA TDHQQQTLEL SIELMRRDSV TPHDKGCQEV LVERLSPLGF VHEFMYFGDE
QASGRDAQVK NLWARRGNQD PVVCFAGHTD VVPTGNPDNW RIAPFDAKVH DGYLWGRGAA
DMKTGIAAFT VATERFVKNH PDHNGSIAML ITSDEEGPSI NGTVKVIEVL EARNEKITYC
LVGEPSSTDS LGDVIKNGRR GSLGGILTVT GKQGHVAYPH LAVNPIHALL PALAEFSVTE
WDKGNDFFPA TSMQISNING GTGANNVIPE TVEVVFNFRF STETTEEELR AKTHEILDKH
FANTEATYEI DWKLSGHPFL TAEGKLVDAC KVAIKDITGT DTQLSTSGGT SDGRFIAPTG
AQVVELGVRN ATIHQVDERV EIDDIGKLAQ IYERMLEELL LG
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