| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0510 |
|---|
| Symbol | |
|---|
| ID | 5205499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 608053 |
|---|
| End bp | 609603 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640598725 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_001279415 |
|---|
| Protein GI | 148652322 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.721239 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA GTAAACTGTT TCGCTCGACA ATGATTGTCA GCTCCATGAC CATGCTCTCA
CGTATTCTAG GCCTTGTGCG CGACATGGTC TTAATGAGTG TGTTTGGTGC TGGTGGCCTG
ATGGATGCTT TTTTGGTGGC ATTCAAGATT CCAAACTTTC TACGCCGTCT CTTCGCTGAA
GGCGCCTTTA GTCAAGCTTT TGTTCCTGTC TTATCTGAAT ACAAAGAGCG CCGTACCCTA
CAAGAAGTAC AGATTTTAAT CAGCCGTACC TCAGGTGCGC TATTGATGAT TTTATCTATG
CTAACGGTAG TGGTTATGTT GGCAGCGCCA TGGGTAGTCA GTTTATTTGC GCCAGGTTTT
GCTGAGGACC CCAATAAGTT TAACACCACC ACCGAGCTAC TGCGTTTAAC CTTCCCCTAT
TTGCTGTTTA TTTCTATGAC CGCCTTTGCC GGTAGTATTT TGCAAAGCTA TGGACGTTTT
GCTGCGCCTG CTGTAGCCCC TGTCCTGCTT AACTTAAGTA TGATTGCGGC CGCTCTCATT
TTTGCGCCTA TGTTTGATAA ACCGATTATG GCCTTAGGTT ACGCCGTTGC CATAGCAGGT
CTATTACAGT TTTTTATCCA ATTGCCGCAG CTGTATCAGC AAAAACTGCT TGTGCCGCCC
AAGATTGATT TTCAGCACGA AGGGGTGCGC CGCATCTTAA AACTGATGTT ACCAGCCATC
TTTGGTGTTT CAGTCACTCA AATTAACCTG CTGCTTAACA CCATCTTGGC ATCATTAATG
ATCACCGGTT CGGTTTCTTG GTTATATGGC GCTGAGCGTT TGACCGAATT GCCTTTGGGT
TTAATTGGGG TCGCCATTGG TACCGTTATT TTGCCAAGCC TGTCTACCAG TGAAGCCAAA
AAAGATGATG TCAGCTTCCG TAAGACCTTA GACTGGGCGG CTCGATTAAT TATTGTGGTG
GGTCTGCCAG CAGCGTGTGC CTTATTTGTG TTGTCTGATG TATTGATGCA GACGCTATTT
ATGCGTGGTG AGTTTTCTTT ACGCGATGCT AATATGAGTG GCTTTGCGCT ACGAAGTATG
TCTGGCGGCA TCTTAGGCTT TATGCTCATT AAAATCTTTG CGCCCGCTTT CTTCGCCCGT
CAAGACACCA AGACTCCAGT GAAAATTGGT ATTATCACTG TGATTGCTAA CATGATATTT
AGCTTAATCT TCGTGGGTCT GTTTTATCTG CTCAAACTGC CTTTGCATGG CGGTCTGGCA
TTGGCCACCA CAGCCGCTTC TTTCGTCAAC GCAGGTCTAC TGTACTATCT TCTGCATAAG
CGCAACTTGT ACCGCTTTGG CCCGCAGTGG AAAAAGCTGT TTGCTCAGTT TGCCATATCT
AGCTTATTGA TGGTGATTGC GCTGTATTTA ATGCTCCCCT ACTTCCCCAC TCATGCTTCA
CAGTGGCATC GCGTCTTTGC TTTATTGCTA ATTTGTGCCG TGGGTGCGCT GGTATATGGT
GTGGTGCTAC TGGCATCAGG CTTCCGTCCT CGTCAATTAA AACATGGCTA A
|
|---|
| Protein sequence | MAKSKLFRST MIVSSMTMLS RILGLVRDMV LMSVFGAGGL MDAFLVAFKI PNFLRRLFAE
GAFSQAFVPV LSEYKERRTL QEVQILISRT SGALLMILSM LTVVVMLAAP WVVSLFAPGF
AEDPNKFNTT TELLRLTFPY LLFISMTAFA GSILQSYGRF AAPAVAPVLL NLSMIAAALI
FAPMFDKPIM ALGYAVAIAG LLQFFIQLPQ LYQQKLLVPP KIDFQHEGVR RILKLMLPAI
FGVSVTQINL LLNTILASLM ITGSVSWLYG AERLTELPLG LIGVAIGTVI LPSLSTSEAK
KDDVSFRKTL DWAARLIIVV GLPAACALFV LSDVLMQTLF MRGEFSLRDA NMSGFALRSM
SGGILGFMLI KIFAPAFFAR QDTKTPVKIG IITVIANMIF SLIFVGLFYL LKLPLHGGLA
LATTAASFVN AGLLYYLLHK RNLYRFGPQW KKLFAQFAIS SLLMVIALYL MLPYFPTHAS
QWHRVFALLL ICAVGALVYG VVLLASGFRP RQLKHG
|
|---|
| |