Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0480 |
Symbol | |
ID | 5205550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 574538 |
End bp | 575632 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640598695 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001279385 |
Protein GI | 148652292 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.632369 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAT CCAACCGAAA ACCTGAGAAA AATGTAGATA AAATGAACAG TCAAAATAGC AAGATAGAGC AAGATTTAGA AGGTCTAATG GCCAGCGTTG GCGCTGAGCC AACCCAAGTT AGACGCCATT CTACCAAGGC TCGCCCACAA AGTGCCGATG AAGATATCAA GGATTTTGGA CAGGTGAACC ACCTAGAGGT TACCCGTAAT CAACATGGCC AACGCATTGA TAATTTTTTG TTAGCCAGAC TTAAAGGTAT GCCGCGCGCG CACATTTATA AGATGATTCG CTCAGATGAG GTGCGTATTA ATAACAAGCG CTGTAAGCCT TATGACAATC TTGAGCGTGG CGATGTGGTG CGTATTGCTC CTGTGAAACT GGCGACTCGC GAAAAACCAG TGATCAGCGA AGGCTTCGCT AAAAGCTTAC TTGAGCGTGT GGTCTATGAA GATGAAGGGC TTATTGTGCT AAATAAGCCT TCAGGCATGG CGGTACATGG TGGCAGCGGC CTAGATTTTG GGGTCATTGA AGCCATGCGT GATGCCACTA GCAAAAAATA TTTGGAGCTG GTGCACCGCA TTGATAAAGA TACGTCAGGC TTACTGATGA TTGCCAAAAA GCGCTCAACG CTTAAAGTTT TGCAAGAGTA TTTGCGTGAA AAAACCATTC AAAAGCACTA TCTGTGCTTG GTAAAAGGGC AGCCGGCACT TAATGAGTTT GAGATTGATG CGCCGTTATT ACGTTACACG GTGGCCAATG GTGAGCGCCG CGTAAAAGTA GATAAAGCTA ATCCTGAAGC TAAGCTTAGT CAGACAACCT GCAAGGTGTT GGCCCGCTTT AAGATGAACG GTGAGCCGGT GAGCTTAATA GAGGCCATGC CTCACACTGG ACGTACCCAT CAAATCCGAG TGCATTTGGC GTATCTGGGT CACCCTATCT TAGGCGATGA CAAATACAAC ATCAAAGATA CCTCAGGGGT TCGACGCTTA TGCCTACATG CTTGGCAGCT AGATGTGCCT GAATATGAGG TGATTAAAGC GCCGCTGCCT GAGGATATGC AGTCGTTATT GCCTGCAGAT TTTAAATTAG ATTAA
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Protein sequence | MSKSNRKPEK NVDKMNSQNS KIEQDLEGLM ASVGAEPTQV RRHSTKARPQ SADEDIKDFG QVNHLEVTRN QHGQRIDNFL LARLKGMPRA HIYKMIRSDE VRINNKRCKP YDNLERGDVV RIAPVKLATR EKPVISEGFA KSLLERVVYE DEGLIVLNKP SGMAVHGGSG LDFGVIEAMR DATSKKYLEL VHRIDKDTSG LLMIAKKRST LKVLQEYLRE KTIQKHYLCL VKGQPALNEF EIDAPLLRYT VANGERRVKV DKANPEAKLS QTTCKVLARF KMNGEPVSLI EAMPHTGRTH QIRVHLAYLG HPILGDDKYN IKDTSGVRRL CLHAWQLDVP EYEVIKAPLP EDMQSLLPAD FKLD
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