| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0473 |
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| Symbol | |
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| ID | 5205218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 561020 |
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| End bp | 563080 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640598688 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001279378 |
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| Protein GI | 148652285 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAAA ACACAGCAGA CACTCATGCC TCAGCACAAG CTCAAGAGGT CATTGCAAAA
ATGCGTACCT TGATCGCACA GGTGCGTAAA CACAACAATG CTTATTATGT GATGGATGAG
CCGACCATCA GTGACAATGA ATATGACCAG TTGCGCTTAA GTCTCATTGA GCTTGAGGAG
CGTTATCCTG AGTTAACTCA GCCCGACAGT CCGACGGCTA GCGTGGGCGA CAATCCTCTG
CCGTCATTCT CCCAAGTGCA GCATGACATT GCTATGCTGT CACTGGGTAA TATTTTTAAT
TATCAAGACT TACAAGAGTT TATGCGCCGG GTCAATGACC GTCTAAGTGA TGCTGATCGA
AATCCTGAGT ATGAGATTGA GATGAAATTA GATGGTTTGG CTGTTTCATT AAAATATCAT
AACGGACAAT TTGTGCGCGG CGTGACTCGC GGCGATGGTC AAATGGGCGA GGACATTACC
CAAAACGTGA AGACCATCAA TAACATTCCA CTGGTGATAG AAGCGGCGCA AGATATTGAT
GTGCTTGAGG TGCGGGGCGA GGTACTGATG CCAAAAGCAG GCTTTAAGCG CTTAAACCGT
TTGGCACAAG AAAATGGTGA TAAAACCTTT GCCAACCCCC GTAACGCAGC AGCAGGTAGT
CTACGTCAAT TAGACCCAGC CGTGGCTGCC AGTCGTCCTT TGGCTTTTTA TGCGTATTCG
GTGAACCAAG GCTTGCCTGA AGCGATTACT TTGCAATCGG CGGCTTTGAC CTGGCTTAAG
CAGTTAGGCT TTACTGTTAG TGACTTTGAA CGGGTAAAAA CAGCCCAGCA AGTTCAAGAC
TACTATGAGT CGATGATACA AAAACGGGCA GATTTAGCCT TTGAAATTGA TGGGATGGTT
ATTAAGGTTG ATGACTTAAC GCTACAAAGT CAACTGGGCG CGTTATCACG TGAACCGCGC
TGGGCCACCG CCTATAAGTT CCCTGCTGAA ACGGTGATGA CCACACTCAA TAGTATTGAA
TGGCAAGTGG GGCGTACCGG TCAGCTGACT CCAGTGGGCA AGCTTGAGCC AGTGCAAGTG
GGCGGTGTGA CGGTCAGTAA CGTGACCTTG CACAACTTCG GGGAAATCCA GCGCCTTGAT
GTGCGTGCAG GTGATACCGT CAGCGTCCAC CGAGCGGGCG ATGTGATACC TAAAGTGACT
CGGGTATGGC ATGATTTGCG CCCTGAGGGT ACCTCGGCGG TGACGCTGCC AACCCACTGT
CCTGTGTGCG ACTCACCTGT GGTATTGCCA GAGGGTGAAG CCTTGGCACG CTGCACCGGT
GAGCTGTTTT GTCCTGCGCA GCAGCAAGAG GCACTAATTC ACTTTGTATC ACGTAAAGCG
ATGGATATTG ATGGGCTCGG TGAGCGCTGG TTAATCAGTT TCTTTGAGCA TGGCATCGTC
AAAACTGTGG CCGATATTTA TCATTTAAAT GAGCATGCCG ATGAGCTGGT TACTCTAGAA
AAATTGGGCG AGAAGTCCGT TAGCAATATG TTGCGCGCCA TTGAAGAGAG TAAAAAAACC
ACACTGGCGC GCTTTATCTA TGCGCTAGGC ATTCGCGGTG TGGGAGAGAC CACAGCACAG
AATCTGGCAC AATATTTTGG TGATTTGCCT GAATTGATGG GCGCCAGCAT TGACGCCTTA
GAGGCCGTAC CTGACGTGGG CCATATTACC GCTGAGCTTA TTTATAATTT CTTCCGTGCT
GAGCATAACA TCGAAGTCAT TAACGCATTG CAGCAAGCTG GCGTGTATTG GGATAAGGTA
GAGCAGCAGG CCTTAGACAA TCTACCCCTT GAGGGCCAAA CGTGGGTGAT AACAGGTACC
TTGGTCGCCA GCGGTATGTC ACGCGATGAT GCCAAAGCGC ATCTGCAAGC TTTGGGTGCA
AAGGTCTCAG GCAGCGTATC GGCCAAAACC TCGGCATTAT TGGCCGGTGA AAAGGCAGGC
TCTAAGTTGA CCAAAGCGCA GAGTCTGGGA GTGCGTGTGG TGTTAGAGGA TGAGTTCTTA
AAGATGATTG GGGCGTCATG A
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| Protein sequence | MTQNTADTHA SAQAQEVIAK MRTLIAQVRK HNNAYYVMDE PTISDNEYDQ LRLSLIELEE
RYPELTQPDS PTASVGDNPL PSFSQVQHDI AMLSLGNIFN YQDLQEFMRR VNDRLSDADR
NPEYEIEMKL DGLAVSLKYH NGQFVRGVTR GDGQMGEDIT QNVKTINNIP LVIEAAQDID
VLEVRGEVLM PKAGFKRLNR LAQENGDKTF ANPRNAAAGS LRQLDPAVAA SRPLAFYAYS
VNQGLPEAIT LQSAALTWLK QLGFTVSDFE RVKTAQQVQD YYESMIQKRA DLAFEIDGMV
IKVDDLTLQS QLGALSREPR WATAYKFPAE TVMTTLNSIE WQVGRTGQLT PVGKLEPVQV
GGVTVSNVTL HNFGEIQRLD VRAGDTVSVH RAGDVIPKVT RVWHDLRPEG TSAVTLPTHC
PVCDSPVVLP EGEALARCTG ELFCPAQQQE ALIHFVSRKA MDIDGLGERW LISFFEHGIV
KTVADIYHLN EHADELVTLE KLGEKSVSNM LRAIEESKKT TLARFIYALG IRGVGETTAQ
NLAQYFGDLP ELMGASIDAL EAVPDVGHIT AELIYNFFRA EHNIEVINAL QQAGVYWDKV
EQQALDNLPL EGQTWVITGT LVASGMSRDD AKAHLQALGA KVSGSVSAKT SALLAGEKAG
SKLTKAQSLG VRVVLEDEFL KMIGAS
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