| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0384 |
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| Symbol | rumA |
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| ID | 5204908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 461801 |
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| End bp | 463351 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640598598 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001279289 |
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| Protein GI | 148652196 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00397678 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000598014 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCAGCCCA CCGATACCAA CAACATTTCT TCTAAAGCCA ACAGTAGCAC TGACCATGCG
TCATTGGCCG CAGCACCGAG CAAGAAGCTC TCTAAGCCCA GCTCGCGTGT GCGTCGTCGC
TTAAAAGATG CGCCACCTCT TGCCTTCAAA ATTGACGGCT TATCCCATGA CGGACGTGGT
GTGGCTATTT ATGGCAATGA GTTTGGCGTA GAAGATGGCC ACAGTGAAGA CAAACATGGC
AAAAAGGTGT TCGTAAGCTT CGCCCTGCCC GATGAGTCAG TCAAGGTACG CTTGACCAAC
AGCCGCAAAA GCTTTGAAGA AGGCGATGCG GTTGAGCTTA TCGCCAACCC TCATCCTGAG
CGCCAAACCC CGCCTTGCCC ACACTTTGGG ACCTGTGGCG GCTGTAGCTT GCAGCACTGG
CAACCTGAGG GCCAAATTGC CTTTAAACAG ACGGTATTGG CTGAGCTACT TGAACACCAA
GCCAATATCC AGCCCGATAA CTGGCTGCAG CCAGTGGTGG CTGATCGCCT AGGCTATCGT
ACCAAAGCGC GTATGGGCGT GCGTTATGTG GCCAAAAAAG ATACCGCCTT GGTCGGCTTT
CGCGAACGTA ATAGCAACTT CTTAGCCGAG CTAAACGAGT GTCACATTCT TGATAAGCGC
ATTGGCTTTG AGCTTGAGAA TCTCAAGAGC TTAATCAGCA GTTTAGAGGC ACGGGCGCAC
ATTGCCCAGA TTGAATTGGC GATGGGTGAA GCCATCCCTG AGCTTAAAGA TGGCAATCAA
CCTGTGGCCT TAATTTTACG TCATTTAGAG CCGCTATCTA AAAGTGATAT TGATCAGCTA
AAGGCGTTCT TTAAAGCACG CAATTGGCAG CTATATTTGC AGTCTAAAGG CCCGGAGAGT
ATTGAGCGTA TTGCTCTACA TGACACAGAC GATGTCAGTG AGCAGTTTGG CCGCTTGTAT
TATCAATTAC CTGAATTTAA CTTAACTTAT GAGTTTATTC CAACCGACTT TACCCAAGTT
AACTTATCGG TTAATCGCAA GATGACCAAG CTGGCTTGCG ACTTGTTGGA TTTAAAACCT
GGTGAGCGTG TGCTTGATTT ATTCAGTGGT CTAGGCAATT TTAGTCTGCC TTTAGCCCGT
TTGGTGGGCG GTGAAGATGG CTCACAAGGT CTGGCCATTG GGGTAGAAGG CTCAGATGCT
ATGACAGCAC GTGCCGCTGA TAATGCCAAA CGCAACGGCA TTAGCAACAC TGAGTTTTAT
AATCAAGACT TAACACAAGA CTTTAGCGAG CAGCCTTGGG CGCAGCAAGG TTTTGATGCC
ATCTTGATTG ACCCGCCTCG CTCAGGTGCT TGGGAGGTTA TGCAGTATCT ACCCCGCTTT
AACGCCTCAC GCATTGTTTA TGTGTCTTGT AATCCTGCCA CTTTAGCACG GGATACCAAG
GCGTTACTTG AGCAAGGCTA CCGTTTAACA GATGCCGGCG TAATGGACAT GTTCTGTCAT
ACAGGTCATG TAGAATCTAT TGCACGTTTT GAAAAATTAC AAACCGTTTA G
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| Protein sequence | MQPTDTNNIS SKANSSTDHA SLAAAPSKKL SKPSSRVRRR LKDAPPLAFK IDGLSHDGRG
VAIYGNEFGV EDGHSEDKHG KKVFVSFALP DESVKVRLTN SRKSFEEGDA VELIANPHPE
RQTPPCPHFG TCGGCSLQHW QPEGQIAFKQ TVLAELLEHQ ANIQPDNWLQ PVVADRLGYR
TKARMGVRYV AKKDTALVGF RERNSNFLAE LNECHILDKR IGFELENLKS LISSLEARAH
IAQIELAMGE AIPELKDGNQ PVALILRHLE PLSKSDIDQL KAFFKARNWQ LYLQSKGPES
IERIALHDTD DVSEQFGRLY YQLPEFNLTY EFIPTDFTQV NLSVNRKMTK LACDLLDLKP
GERVLDLFSG LGNFSLPLAR LVGGEDGSQG LAIGVEGSDA MTARAADNAK RNGISNTEFY
NQDLTQDFSE QPWAQQGFDA ILIDPPRSGA WEVMQYLPRF NASRIVYVSC NPATLARDTK
ALLEQGYRLT DAGVMDMFCH TGHVESIARF EKLQTV
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