| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0348 |
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| Symbol | |
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| ID | 5205332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 419924 |
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| End bp | 421261 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640598560 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001279253 |
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| Protein GI | 148652160 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000869616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000188674 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAACC CCGACTTATC TCAAGCCGCC GTACAACATA GCGAATCTGG TCTACGCATC
AATCCTGAAG TCTTTGTCAA AAAACTGCCC ACTTTAAGCT ATCAGCAAGG GACCTTGTTT
GTGGAGCAAG CCTCTGTACA GCAGTTGGCT GAGCAGTATG GTACGCCTTT GTATGTGTAT
TCAAAGCAGG CAATTTTGGA TGCTTATACG GCATACACTA CCAGTTTTGC AGCCATTGAC
CATCAGGTCT GCTATGCGGT CAAAGCCAAC TCAAACTTAG CGGTGTTGTC AGTATTGGCC
AAAGCCGGTG CAGGCTTTGA TTTGGTGTCC TCAGGGGAGC TGGCTCGAGT ACTGGCCGTG
GGCGCTGACC CCAGTAAAAT TGTATTCTCA GGTGTGGGCA AAACCGTCAC TGAACTCACA
GCGGCGCTTA AAGCAGGTAT TGGCTGCTTT AACGTAGAGT CATTAAGTGA GCTTGATACG
CTAAATGCGG TGGCAGCAGA GCTGAATGTT AAGGCGCCGA TCTCCATTCG GGTCAACCCA
GATGTCGATG CCAAAACCCA TCCTTATATT TCAACCGGCC TAAAAGACAA TAAATTTGGT
ATCAGTCATG ACATCGCTGT GGCAGCATAT CAACATGCCG CAAGCTTAGA GCACTTACAG
ATTGTCGGTA TTGACTGCCA TATTGGCTCA CAGTTGACCG AAATTGATCC GTTTGTGGCC
GCTTTGGATA AGGTGTGTGA GCTGATTGAA GCGCTCAAAC AAGTAGGTAT TGAGCTACAG
CACATTGATT TGGGCGGTGG TTTGGGCGTT ATCTATATTG ATGAAGAGGT GGCTAAGGTC
AGTGAGTTTG CCGCCGCTTT ATTACCAAAA CTACAAGAGC TTGGGTTAAA AGTATTTTTT
GAGCCGGGTC GCAGTATTGT TGCCAACGCT GGCATGCTGG TTACCAAGGT TGAGGTGTTA
AAACCCACTG AGCATAGAGA CTTTGCTATT GTTGATGCGG CCATGAATGA TTTAATTCGT
CCAGCGCTGT ATCAAGCCGA AATGGCGGTC ATTCCGGTAC AAACAGCGTC GCAAGCATCA
CAGAAGAGCT GGGATATTGT CGGTGCTGTG TGCGAAACCG GCGACTTTTT GGCCAAAAAA
CGTCTGTTAA GCCTAGCGGT TGGCGATATC TTGGCCATTA CTGGTGCTGG CGCTTATGGC
TTTGTGATGA GTAGCAACTA CAATTCGCGC CCACGTCCTG CTGAAGTTAT GGTGTCAGGG
GATAAGCACC AAGTGGTACG CGCCCGTGAG ACCGTAGCAC AGTTATTTGA GACGGAATCA
ACGTTTGATA TAGATTAA
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| Protein sequence | MSNPDLSQAA VQHSESGLRI NPEVFVKKLP TLSYQQGTLF VEQASVQQLA EQYGTPLYVY
SKQAILDAYT AYTTSFAAID HQVCYAVKAN SNLAVLSVLA KAGAGFDLVS SGELARVLAV
GADPSKIVFS GVGKTVTELT AALKAGIGCF NVESLSELDT LNAVAAELNV KAPISIRVNP
DVDAKTHPYI STGLKDNKFG ISHDIAVAAY QHAASLEHLQ IVGIDCHIGS QLTEIDPFVA
ALDKVCELIE ALKQVGIELQ HIDLGGGLGV IYIDEEVAKV SEFAAALLPK LQELGLKVFF
EPGRSIVANA GMLVTKVEVL KPTEHRDFAI VDAAMNDLIR PALYQAEMAV IPVQTASQAS
QKSWDIVGAV CETGDFLAKK RLLSLAVGDI LAITGAGAYG FVMSSNYNSR PRPAEVMVSG
DKHQVVRARE TVAQLFETES TFDID
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