| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0266 |
|---|
| Symbol | sucA |
|---|
| ID | 5206738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 313445 |
|---|
| End bp | 316321 |
|---|
| Gene Length | 2877 bp |
|---|
| Protein Length | 958 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640598476 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_001279171 |
|---|
| Protein GI | 148652078 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTA TGACTAATGA TGCCTTAAAA GCCGATGCTA CAGAGCTTGC AGGGGACAAC
GCTACCTATA TCGAGTCTCT ATACGAGCAG TATTTACAAG ACCCAAGTAG TGTAGATGCT
GATTGGCAAG CTTATTTCAA AAACTATCAA AGCGACAATG ATGCCCTGCA TCATGCCATC
CAAGATCAGT TCTTACTGTT AGCCCGTAAT CAAACGGCTA ATAAAGGCGC TGCGGCTCCT
GCTACCTCAG GTAGCTTAGA TTCCAACTGC GTTGATCCAA GACATATGGG CGTACAAAAG
CTAATTTCAG CTTATCGCCG TCGTGGTCAT CGCCGTGCCA AGCTTGATCC TTTAGGTCTA
CAGCCACGTG CGGATGTAGA AGACCTAACC TTAGCGTATC ATGGTCTATC AGAGGCGGAT
CTAGACACCA TCTTCTCAAC CAGTGACTTA AACATTGGTA AGAGCGAGGC GAGCCTACGC
GAAATCATCG AAATCATGGA GCGTGTGTAC TGTGGCCACA TCGGTCTTGA GTACATGCAC
GTGACGACCA GCACTGAGAA GCGCTGGTTT GAAAACTACA TGGAAACCAA CCTAGGCTAC
ATCAAGTTTG ACAACGAGAA GAAAAAAGAG ATTCTTGAGC GTCTAACTGC GGCCGAAGGC
CTAGAGAAAT ACTTAGCACG TAAATACACC GGTGTTAAGC GCTTCGGTCT TGAGGGCGGT
GAAAGCTTTA TTCCAGCGGT TCACGAAATT ATTCAGCGTG CAGGTGGCTA CGGTACCAAA
GAGATGGTTA TCGGTATGGC TCACCGCGGC CGCTTAAACC TATTGGTTAA TATCTTGGGT
AAAAACCCAG CGGACTTATT TGATGAGTTC GATGGTAAAG TCATGCCAGA AAAAGGCTCA
GGTGACGTAA AATACCACAA TGGTTATTCA TCAAACGTGA TGACACCAGG TGGTGAGGCG
CACTTAGCAT TGGCCTTTAA CCCATCACAT CTAGAAATCG TTTCTCCTGT ACTTGAAGGC
TCAGTACGTG CCCGTCAAGT TCGCCGCAAT GACAAAGATG GTAACTTAGT ATTGCCATTG
GTAGTACATG GTGACGCTGC GATTGCTGCG CAGGGTGTGG TTCAAGAAAC TTTCCAGATG
TCACAGACCC GTGCTTACAC CACAGGCGGT ACCGTTCACA TTGTTATTAA CAACCAAGTG
GGCTTTACTA CCAGCCGTCA AGAAGACGCT CGCTCTACAG AGTACTGTAC TGACATCGCC
AAAATGGTGC ACGCACCAAT CTTACACGTC AATGGTGATG ATCCTGAAGC GGTTGTATTT
GCGGCTCAAA TGGCATTAGA TTATCGTCAC GAGTTCCACA AAGACATCGT GATTGACTTA
TTCTGCTACC GCCGTAACGG TCACAACGAA GCCGATGAGC CATCAGCCAC TCAGCCACTG
ATGTACTCGA TCATCAAAAA ACTGCCAACC ACGCGTACTC AGTATGCCCA AAAGCTAATG
TCACAAGGTG TTATCTCTGA AGGCGACGAC AAGACGCTTG AAGATGAATA CCGCGAAGCA
TTAGATAAAG GCGAATATGT TGCTAACTCT TTAGTACAGC AGCCTAATGA AGAGCTGTAT
GTGGACTGGA GCCCCTACTT AGGTCATGAG CTAAAAGATG ACTGGGATAC CAGTGTTGAT
ATCGAAAAAC TAAAAGCCTA TGGCCGCCGC ATGGCAGAAA TGCCTGAAGG CTTTAAGCTT
CAGCGTCAAG TTCAAAAAGT AGTCGAGCAG CGCTTAGCGA TGCAAACTGG TGAAGAGCCT
TTAAACTGGG GCGCTGCTGA GACTTTAGCT TATGCCTCAC TAGTAGACGA AGACTTCTTA
GTGCGTATTA CCGGTGAAGA CGTGGGCCGT GGTACTTTCT CACATCGTCA CTCAGAGATT
TTCAACGTTG AAAATGGTGA TATGTATGTG CCGCTAGCGC ATTTAAATGA CACCCAAGCT
CGCTTTGCCA CTTACAACTC ATTGTTGTCA GAAGAAGCGG TATTGGCGTT CGAATACGGC
TATGCAACGA CAGTACCAAA AGCACTTATC ATTTGGGAAG CTCAGTTTGG TGACTTCGTA
AACGGTGCGC AGGTCGTGAT TGACCAGTTC ATCTCAAGTG GTGAAACCAA GTGGCAGCGT
GTGTGTGGTC TAACCATGCT TCTACCACAT GGCTTTGAAG GTCAAGGTCC TGAGCATTCA
TCAGCCCGTT TAGAGCGCTT CTTGCAACTG TGTGCTGAAG ACAACATGCA AGTGATTACC
CCAACCACAC CTGCACAAAT CTTCCACGCC TTACGTCGTC AAGCGGTACG CCCAATTCGT
AAGCCACTAG TGGTGATGTC ACCGAAGAGC TTACTGCGTC ACAAACTTGC GACCTCAGAG
CTTGAAGAGC TTGCTAACGG TAAGTTTGAA ACTGTACTAC CAGAGATCGA TCAGCTAGAT
AACGATAAAG TGACTCGTAT CGTCATGTGT GGTGGTAAGG TCTATTATGA CCTACTAGAG
CAGCGTCGTG AGCTGGGCCT AGATCATGTG GCCATCGTTC GTATCGAGCA GCTGTACCCA
TTACCACAAC AAAGAATGGT AGAAGAGGTT CAAAAATATG CCAACCTTGA AGAGATTGTA
TGGTGTCAAG AAGAGCCATT AAACCAAGGC GCATGGTACT ATTTAGCACC GCATATGTTC
CGTATCTTTG GCCCACAAGC TGACAATCAG CCTCGTGTGA CCAAGGCACG TGTGGTAGAC
CCTGTCGCGC GTCCTGCGTC AGCAGCGCCA GCAACTGGTC TTCCTTCAAT CCATGTGCGT
CAGCAGCGTG AGCTGGTTGC CGGTGGTCTT GGTGTCTCAG TAGACCAACT AAAATAA
|
|---|
| Protein sequence | MNTMTNDALK ADATELAGDN ATYIESLYEQ YLQDPSSVDA DWQAYFKNYQ SDNDALHHAI
QDQFLLLARN QTANKGAAAP ATSGSLDSNC VDPRHMGVQK LISAYRRRGH RRAKLDPLGL
QPRADVEDLT LAYHGLSEAD LDTIFSTSDL NIGKSEASLR EIIEIMERVY CGHIGLEYMH
VTTSTEKRWF ENYMETNLGY IKFDNEKKKE ILERLTAAEG LEKYLARKYT GVKRFGLEGG
ESFIPAVHEI IQRAGGYGTK EMVIGMAHRG RLNLLVNILG KNPADLFDEF DGKVMPEKGS
GDVKYHNGYS SNVMTPGGEA HLALAFNPSH LEIVSPVLEG SVRARQVRRN DKDGNLVLPL
VVHGDAAIAA QGVVQETFQM SQTRAYTTGG TVHIVINNQV GFTTSRQEDA RSTEYCTDIA
KMVHAPILHV NGDDPEAVVF AAQMALDYRH EFHKDIVIDL FCYRRNGHNE ADEPSATQPL
MYSIIKKLPT TRTQYAQKLM SQGVISEGDD KTLEDEYREA LDKGEYVANS LVQQPNEELY
VDWSPYLGHE LKDDWDTSVD IEKLKAYGRR MAEMPEGFKL QRQVQKVVEQ RLAMQTGEEP
LNWGAAETLA YASLVDEDFL VRITGEDVGR GTFSHRHSEI FNVENGDMYV PLAHLNDTQA
RFATYNSLLS EEAVLAFEYG YATTVPKALI IWEAQFGDFV NGAQVVIDQF ISSGETKWQR
VCGLTMLLPH GFEGQGPEHS SARLERFLQL CAEDNMQVIT PTTPAQIFHA LRRQAVRPIR
KPLVVMSPKS LLRHKLATSE LEELANGKFE TVLPEIDQLD NDKVTRIVMC GGKVYYDLLE
QRRELGLDHV AIVRIEQLYP LPQQRMVEEV QKYANLEEIV WCQEEPLNQG AWYYLAPHMF
RIFGPQADNQ PRVTKARVVD PVARPASAAP ATGLPSIHVR QQRELVAGGL GVSVDQLK
|
|---|
| |