| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0256 |
|---|
| Symbol | |
|---|
| ID | 5204970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 300465 |
|---|
| End bp | 301583 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640598466 |
|---|
| Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| Protein accession | YP_001279161 |
|---|
| Protein GI | 148652068 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II |
|---|
| TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000483093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00388201 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTAG ATAATATTAA AGACATCATT GAAGACATTC GCGCTGGTAA AATGGTCATC
TTAATGGATG ATGAAGACCG CGAAAATGAA GGCGACCTGA TTATGGCCGC CACTCATGTC
AACCCTGAAG CCATTAACTT TATGATTACC CATGCCCGCG GCTTGGTGTG CTTGACCTTG
ACTGAAGAGC GCTGCCGCCG TCTTGAGCTG CCGCTGATGA GTGACCGTAA CGAGGCCAAA
TTCAGCACCA ACTTCACCGT GTCTATCGAA GCGGCTGAAG GCGTGACGAC TGGTATCTCT
GCTGCTGACC GTGCACGTAC CGTGCAAGCC GCGGTGTCTG CCACAGCCAA GGCCGAAGAC
ATTGTGCAGC CTGGCCATAT CTTCCCCATC ATGGCGCAAA AAGGCGGCGT ATTGCACCGT
GCTGGCCATA CCGAAGCTGG CTGTGACTTG GCACGCCTAG CCGGTCTTGA GCCTGCCGCG
GTTATCGTAG AAATCATCAA TCCCGATGGC ACCATGGCCC GCCGTGATGA TTTAGAAAAA
TTCGCCGCCG AACATGATCT AAAAATCGGT ACCATTGCCG ATCTCATCAA CTACCGCATT
GCCAATGAGC AAACGGTCAA TGAAGTCAGC AAACGTCCAT TTGAAACCGA TTTTGGCACC
TTTACCCTAT ATCAATTTAA AGAATACGGT GCGTCAGAGA CTCACTTAGC CCTTGTCAAA
GGCAATCCTA GCGAAGGCGT GAGTACCGTG CGTGTGCATG GCTTCCATCC GCTACGTGAT
TTATTTGCTG CCAAACGTGA TGCCACCGGC CGCAGTGGTT GGAGTATCCA AAACTCTTTA
CAAGAAATCA GTCAGTCTGA GCGCGGCGTA CTGGTCTGGA TTGGCAACAA TCAGCCGGTT
GATCTGGGCG AAGCGCTTGA GCTTGCCAGC AACAACCAAT CTGTCTCTAC GCTATCCAAT
CAGCCTTACC GCAGCATCGG CGTGGGCGCA CAAATCTTAC GTCACCTAGG TGTACGTGAC
ATGCGCTTAT TATCTACCCC GCTCAAATTT AATGCGTTGT CAGGCTTTGA TTTAAATGTC
GTCGAGTGCA TTGACTCCCC TGATGCGCCA AATGCTTAA
|
|---|
| Protein sequence | MALDNIKDII EDIRAGKMVI LMDDEDRENE GDLIMAATHV NPEAINFMIT HARGLVCLTL
TEERCRRLEL PLMSDRNEAK FSTNFTVSIE AAEGVTTGIS AADRARTVQA AVSATAKAED
IVQPGHIFPI MAQKGGVLHR AGHTEAGCDL ARLAGLEPAA VIVEIINPDG TMARRDDLEK
FAAEHDLKIG TIADLINYRI ANEQTVNEVS KRPFETDFGT FTLYQFKEYG ASETHLALVK
GNPSEGVSTV RVHGFHPLRD LFAAKRDATG RSGWSIQNSL QEISQSERGV LVWIGNNQPV
DLGEALELAS NNQSVSTLSN QPYRSIGVGA QILRHLGVRD MRLLSTPLKF NALSGFDLNV
VECIDSPDAP NA
|
|---|
| |