| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0119 |
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| Symbol | |
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| ID | 5205508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 142442 |
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| End bp | 143326 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640598328 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001279029 |
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| Protein GI | 148651936 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.181103 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCAT CTGACATCAG CCGTAATCTT ACTATTGATT CAAACTCCGA CACCAAATGC
TCAGTTGATG CGCAGACGCA GCATTTTATG GTTATTGGTA ACCCCATTGC ACACAGTAAA
TCGCCACAAA TTCATCAGCA ATTCGCTAAG CAAACCGGAC TCGATATTCG TTATGCACGT
CAATACTGTC CTGACGATAA GGCCAGCTTT ACGGCAGTGG TAGAAGCGTT TTTTAATGGC
GGCGGTGTGG GCGCTAATGT CACGGTGCCT TTTAAGCAGA TTGCTTATCA GATGTGCGCC
GAGCAAGGCG GCTTGTCTGC ACATGCTCAG GTGGCAGGCG CCGTCAACAC CTTGTTACTC
AAAGACGGTA AGCTGTTTGG TGATAATACC GATGGTCAAG GTCTGGTCAA TCACTTACGG
CAATTGGGTT GGCCGCTACA GGGCGCTAAA GTGGCGATAT TGGGCGCAGG CGGTGCATCA
CGAGGTGTGG TATTACCACT GATTGAAGCG GGTATAAGCG AGCTGACCAT TGCCAATCGC
ACGCTCAGTA AGGCTGAAGA TTTGATAGAT CAGCTGTGTA GCGCCCATCC TTTGATTGCA
ACCATTGCCC CTACAAGCTG CACCATCGAG GCACTCACGG GTCAATACGA TTTAATCATA
AATGCCACCT CCATTGGCTT ATCTGGCGAC AGCCTGCCAC TTAGAGAGGC ACTTAGATGC
GGCTATGCTT ATGACATGAT GTATGGCCGT GAGCTGCCCT TTTTGACCCA TTTTCACTCA
CACTCCGCCC AAGTCTCTGA GGGCTACGGT ATGCTAATCG GTCAGGCGGC TTTAAGCTTT
ACTCAATGGA CCGGTAAGGC TGTAGATAGC AATTTATTCA TTTAA
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| Protein sequence | MSPSDISRNL TIDSNSDTKC SVDAQTQHFM VIGNPIAHSK SPQIHQQFAK QTGLDIRYAR
QYCPDDKASF TAVVEAFFNG GGVGANVTVP FKQIAYQMCA EQGGLSAHAQ VAGAVNTLLL
KDGKLFGDNT DGQGLVNHLR QLGWPLQGAK VAILGAGGAS RGVVLPLIEA GISELTIANR
TLSKAEDLID QLCSAHPLIA TIAPTSCTIE ALTGQYDLII NATSIGLSGD SLPLREALRC
GYAYDMMYGR ELPFLTHFHS HSAQVSEGYG MLIGQAALSF TQWTGKAVDS NLFI
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