| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0089 |
|---|
| Symbol | avtA |
|---|
| ID | 5205790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 107494 |
|---|
| End bp | 108798 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640598298 |
|---|
| Product | valine--pyruvate transaminase |
|---|
| Protein accession | YP_001278999 |
|---|
| Protein GI | 148651906 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3977] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTT CAAAATACGG ACAGCAATTC ACCCAAACCA GCGCCATCTC TCAACTTATG
GACGACCTAG GCGACGCCCT AAAAAGCCCA ACACCTGTCA ATATGTTAGG CGGTGGTAAC
CCAGCACGCA TTGATAAAGT GAATGAAGCC TATTTTGAGG TCTATAAATC ATTGGAAAAA
GGCGGCATTG AAGGCGGCGC CATCGAATCA GTGGGCAACT ACTCAAATCC GCAAGGCGAT
GCCAAATTTA TCGAGGCCTT GGTGGCTTTT TTTAACCGTC ATTACCACTG GAACCTTACC
ACTGAGCATA TCGTGCTGAC CAATGGCTCA CAAAATGCTT TTTTCTATTT GTTTAACTTG
TTTGGTGGTC AATTCGAAGA CGAAAAAGGC AATACCACCA CCAAATCTAT TTTATTGCCA
CTAGCACCAG AGTATATCGG CTATAGCGAT GTGCACATTG ATGGCAAACA CTTTATTGCT
ATAAAGCCTG AGATTGAAGA GGTTGAGCAC GAGGGCGAAA GCGGCTTTTT TAAATACAAA
ATTGACTTTG ATGCCTTAGA GAACTTGCCA GCACTAAAAA ATGGGGAAAT TGGTGCAATC
TGCTGCTCAC GCCCCACCAA CCCCACCGGC AATGTGCTGA CCGATGAAGA AATGGCACAT
TTATCGCAGC TTGCCAAACA GTACGACGTG CCTTTGATTA TCGATAATGC TTATGGTGAG
CCCTTCCCCA ATATTATTTA TCCTGATGTC AATCTAAACT GGGATGAGAA TACGGTTTTG
TGCTTTAGCT TGTCTAAAAT AGGCCTACCT GGCGCCCGTA CCGGTATCAT TATTGCCGCC
CCAGAAGTGG TAAAAACCGT GAGCGCCATG AACGCTGTGG TCAATCTGGC CCCCACTCGC
TTTGGGGCTG CCATTACCGG ACCGCTACTT AATGACGACA GCCTAAAGCA GCTGTGTGAT
GAGACCATCC AGCCCTTTTA TGCAGCAAAA GCTAAGCTTG CCATCGAGTA TTTAAAACAG
CAGCTGGGTG AGTATCCGGT GTTCATTCAC AAGCCAGAAG GGGCGATTTT CTTGTGGGTG
TGGTTCAAGG ACTTACCCAT TAGCACCACA GAGCTTTATG AGCTGTTAAA ACAAAAAGCC
ACACTCATTG TGCCAAGTGA ACACTTCTTC CCAGGCTTAG ACATCAGCGA TTATCCACAC
GCCCATCAGT GCATCCGGAT GAGTATTGCC GCCAGTGATG AAACGTTGGC ATCGGGCATT
AAAGTCATTG GTGAAGTGGT ACGCAGCTTA TATGACGCCC AATAA
|
|---|
| Protein sequence | MKFSKYGQQF TQTSAISQLM DDLGDALKSP TPVNMLGGGN PARIDKVNEA YFEVYKSLEK
GGIEGGAIES VGNYSNPQGD AKFIEALVAF FNRHYHWNLT TEHIVLTNGS QNAFFYLFNL
FGGQFEDEKG NTTTKSILLP LAPEYIGYSD VHIDGKHFIA IKPEIEEVEH EGESGFFKYK
IDFDALENLP ALKNGEIGAI CCSRPTNPTG NVLTDEEMAH LSQLAKQYDV PLIIDNAYGE
PFPNIIYPDV NLNWDENTVL CFSLSKIGLP GARTGIIIAA PEVVKTVSAM NAVVNLAPTR
FGAAITGPLL NDDSLKQLCD ETIQPFYAAK AKLAIEYLKQ QLGEYPVFIH KPEGAIFLWV
WFKDLPISTT ELYELLKQKA TLIVPSEHFF PGLDISDYPH AHQCIRMSIA ASDETLASGI
KVIGEVVRSL YDAQ
|
|---|
| |