| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0014 |
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| Symbol | |
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| ID | 5205625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 18165 |
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| End bp | 19919 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640598222 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001278924 |
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| Protein GI | 148651831 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0977143 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATCT CGCAGCGCCG TCCCGATCAT GAGCCTGATA CCCGTATTGA TAAGTTCACC
TTTGGGATGG TATTGGCCAT CTTATTGGGC ATCTGTATTC CCCTAATTTT CTTCCCAGAG
CAAGGTAAAG AATGGGTCGG TATTGCTCGT AATTTTGTCA CCACTAATTT TGGTTTTGCC
TACCTCACCT TTGGGGTGCT GGCGATGATG TTTGTGATTT ACATCATCTT CTCTGATATC
GGTAAAATTA AACTCGGTCG CCCAGAAGAC ACCCCTGAAT TTGGCGATGC CTCTTGGGCA
GCCATGCTAT TTTGTGGGGG TATTGGTGCC AGTATCCTGT ACTGGGGCTT AATTGAGTGG
GCCTACTATT ACCAAGGACC ACCGTTTAAT ATTGCCGCAG GCTCCCCCGA TGCCATCCGC
TGGGCGACCA CTTATGGCAT ATTCCACTGG GGCCCTGTGG CTTGGGCCAT CTATCTGGTA
CCGGCTGTGC CTATCGCCTA TTTTTATTAC GTGCGCCAGA CCCCAGTTCT CAAAGTCAGT
CAGACCCTAA TGCCCTTATT GGGTGAGAAG CTTGCCAGCA GCAACTGGGC TAAAATGCTC
GATGTGCTGT TTGTGTTCGG TATGGTTGGT GGTGGTGCGA CCACGCTAGG TTTGGCCTCA
CCCCTAATTA ACGAAGGTCT GTATAACTTA TTTGGCCTAC CGCGCAACAT TACCATGCAG
TTGGCGGTAT TGTTCGTGAC CACCATGATT TTCGCTTATA GTGCCTATCA AGGTCTTAAA
GGCGGTATTC AAAAACTATC CAATATCAAC TTTTATCTTG CCGTAGCCTT CTTGCTATTT
ATTTTAGTAA CAGGCCCTAC CGTCTTTATT TTTAATACAG GTCTAGAGGC TTTGGGACGC
TCCCTTACTG AAATGCCGCG GATGATGACT TATATTGAGC CGTTTAAAGA CTTTGGTAGT
TTTGGCTTTG AGCACACCAC TTTTCCACAA GATTGGACCG TATTCTACTG GGCATGGTGG
CTAGTATTTG CACCCACTAT TGGTCTATTT ATCGCTAAGA TTTCACGCGG TCGCACCATT
CAAAACATGG TGGTGGGCTC TATGTTCTAC GGCTCATTGG GCTGTGCAAT GTTTATGATT
ATCTTGGGTA ACTATGGCCT ATATTTGCAG CTAACCGGTA CCGTCGATGT GGTGTCAATT
TTAAACAATG AGACAGCCAC GGCAGCTATT TTTGCGATTT TAAATAGTCT CCCCATGTCG
TACTTGGTCA TATCGGTATT TACCTTCTTG GCCATCATCT TCACCGCGAC GACCTTTGAC
TCTATCTCCT ATATTTTAGC GTCTGTGGTA CAGGTAGAAG TGGATGATGA GCCGCACCGC
TGGAACCGCT TATTTTGGGC ATTTACCTTG TGTCTACTGC CAGCCATCTT GATGTTCTTA
GGCGACTTGG CCACACTACA GACCGCCTCC ATTATTGCTG GTGCGCCACT GATTATCATC
TTATCTATGA TGATGTTATC GCTGATTAAA GCGGCCCGTT ACGACCTACA TTATCAGCCA
GATTACAACT TAAAAACCAT TCATATTGAA GAGCTGGCCG AAAATGCACC TTGGGAAGAA
GGCGAAACCT CTGAGGCTCC TGAGGGCTCA GTATTAGCAC AGCAAGAAGA GTGGGAAACC
ATGATTGAGG ATGAAGAAGC ACAGCTTGCT GAGGAAGAAA AGCAAGATGA GCTCGATAAA
GACTCAGATA AATAA
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| Protein sequence | MQISQRRPDH EPDTRIDKFT FGMVLAILLG ICIPLIFFPE QGKEWVGIAR NFVTTNFGFA
YLTFGVLAMM FVIYIIFSDI GKIKLGRPED TPEFGDASWA AMLFCGGIGA SILYWGLIEW
AYYYQGPPFN IAAGSPDAIR WATTYGIFHW GPVAWAIYLV PAVPIAYFYY VRQTPVLKVS
QTLMPLLGEK LASSNWAKML DVLFVFGMVG GGATTLGLAS PLINEGLYNL FGLPRNITMQ
LAVLFVTTMI FAYSAYQGLK GGIQKLSNIN FYLAVAFLLF ILVTGPTVFI FNTGLEALGR
SLTEMPRMMT YIEPFKDFGS FGFEHTTFPQ DWTVFYWAWW LVFAPTIGLF IAKISRGRTI
QNMVVGSMFY GSLGCAMFMI ILGNYGLYLQ LTGTVDVVSI LNNETATAAI FAILNSLPMS
YLVISVFTFL AIIFTATTFD SISYILASVV QVEVDDEPHR WNRLFWAFTL CLLPAILMFL
GDLATLQTAS IIAGAPLIII LSMMMLSLIK AARYDLHYQP DYNLKTIHIE ELAENAPWEE
GETSEAPEGS VLAQQEEWET MIEDEEAQLA EEEKQDELDK DSDK
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