Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_4592 |
Symbol | |
ID | 5211578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 5751976 |
End bp | 5753850 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640598171 |
Product | pseudouridine synthase |
Protein accession | YP_001278873 |
Protein GI | 148658668 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.667434 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGTGCAG AACGATTACA GAAGGTGCTG GCAAGCGCCG GCATTGCGTC GCGGCGTGAT TGCGAAGAGT ATATCGCCGC AGGGCGTGTC ATGGTCAACG GGAAGGTGGT TCGCATTCCT GGTACGCGCG TTGACCCGGA ACACGATGAG ATACTGGTCG ATGGCAGACC GATTGGGAAA ATTCATCACC GCACCTATGT GATGCTCCAC AAACCTGCTG GCGTGGTCTC CACAACCGAC GATCCGCAGG GTCGTCCAAC TGTCATCGAT CTGGTCAATC TGGAACAACG ATTGTTTCCG GTAGGTCGGC TGGATTATGA CTCGGAAGGG TTGCTCCTGT TGACCGATGA TGGTGAACTG ACCCAGAAAT TGACCCATCC GAGTTACCAG GTCGAAAAAG AGTACCGTGT GCTCTTGAAC GAGGCGCCTT CACCGGCTGC GCTGCGTGCC TGGCGCACCG GTGTCGAACT TGACGGGGTG AAAACTGCGC CTGCGTGGGT CGAGCTGATC GAACGCACGC CCGATGGCGC CTGGGTGCGC GTCATCCTGC ACGAGGGGCG CAAGCGCCAG ATTCGTGAAG TGGCGCGCGT TTTGGGGTAT GAGGTGCGGC GGTTGATCCG TGTACGCGAA GGTCCGCTGA CATTGGGCGA CCTTCCGAGC GGTACATGGC GTTTTCTTAC TGATGAAGAG GTTGATATGT TGCGAGAACA CGCCGAACGA AACGCGGCGG TCGCCGAAGC GGAACAGCCG CGTCGGCGTG AACAGGGTGA GACGCAGGTC TCTGGCGGGC GCCGGTTGCG ACGCATTACT CCGTCGGCGC GATTGTTGCA GAAGGGCGAT CAGGTGACGG ACACGACTCT CCCTGATCTC GATGAGGCGG TTGAAAGCGT TCAGCCGCCG CCGGTCGTCG ATGAGAGGCG CAGTTCACGG GATAACGAGC GAATCCGCCA TGATGAACGT CCGCCACGCG ATGTTCGCCA TTCCGGGCGG GATGGGTATG GCCGTGAGCA GCGCGACAGG CGCGGTTCAG GCGATGGACG TGGCGATCGG CGGGACGAGC GGGGCGGCGG GTACCGGGAG CGGCGCGATG AGCGGGGCGG CGGATACCGG GAGCGGCGGG AGGAGCGGGG GACGAGTGGA CCGCGCGACT TCCGGCGGGA TGAGCGGGGC GGCGGGTACC GGGAGCGGCG GGAGGAGCGA GGGGGGAATG GACCGCGCGA CTTCCGGCGG GATGAGCGGG GCGGCGGGTA CCGGGAGCGG CGGGAGGAGC GAGGGGGGAA TGGACCGCGC GACTTCCGGC GGGATGAGCG GGGCGGCGGG TACCGGGAGC GGCGGGAGGA GCGAGGGGGG AATGGACCAC GCGACTTCCG GCGGGACGAG CGAAGCGGCG GGTACCGGGA GCGGCGGGAA GAGCGGGGGG CGAATGGACC GCGTGACTTC CGGCGGGATG AGCGAGGCGG CGGGTACCGG GAGCGGCGGG AAGAGCGGGG GGCGAATGGA CCGCGTGACT TCCGACGGGA CGAGCGAAGC GGCGGGTACC GGGAGCGGCG GGAGGAGCGG GGGGCGAATG GACCGCGTGA CTTCCGGCGG GACGAGCGAG GCGGCGGGTA CCGGGAGCGG CGGGAAGAGC GGGGGGCGAA TGGACCGCGT GATTTCCGAC GGAATGAGCG GGGCGGCGGG TACCGGGAGC GGCGGGAAGA GCGGGGGGCG AATGGACCGC GTGATTTCCG ACGGGATGAG CGGGGCGGCG GGTACCGGGA GCGGCGAGAC GAGCGGAGCG GGTATCGTGG AGAACGACGC AATGATCGCG GCTCGCGGGG GTTTTCGGGC AATGATCGCC CTGCGCCACG TTCTCTCGAG GAAGAAGAGG AGTAA
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Protein sequence | MSAERLQKVL ASAGIASRRD CEEYIAAGRV MVNGKVVRIP GTRVDPEHDE ILVDGRPIGK IHHRTYVMLH KPAGVVSTTD DPQGRPTVID LVNLEQRLFP VGRLDYDSEG LLLLTDDGEL TQKLTHPSYQ VEKEYRVLLN EAPSPAALRA WRTGVELDGV KTAPAWVELI ERTPDGAWVR VILHEGRKRQ IREVARVLGY EVRRLIRVRE GPLTLGDLPS GTWRFLTDEE VDMLREHAER NAAVAEAEQP RRREQGETQV SGGRRLRRIT PSARLLQKGD QVTDTTLPDL DEAVESVQPP PVVDERRSSR DNERIRHDER PPRDVRHSGR DGYGREQRDR RGSGDGRGDR RDERGGGYRE RRDERGGGYR ERREERGTSG PRDFRRDERG GGYRERREER GGNGPRDFRR DERGGGYRER REERGGNGPR DFRRDERGGG YRERREERGG NGPRDFRRDE RSGGYRERRE ERGANGPRDF RRDERGGGYR ERREERGANG PRDFRRDERS GGYRERREER GANGPRDFRR DERGGGYRER REERGANGPR DFRRNERGGG YRERREERGA NGPRDFRRDE RGGGYRERRD ERSGYRGERR NDRGSRGFSG NDRPAPRSLE EEEE
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