Gene RoseRS_4592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_4592 
Symbol 
ID5211578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp5751976 
End bp5753850 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content66% 
IMG OID640598171 
Productpseudouridine synthase 
Protein accessionYP_001278873 
Protein GI148658668 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.667434 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGTGCAG AACGATTACA GAAGGTGCTG GCAAGCGCCG GCATTGCGTC GCGGCGTGAT 
TGCGAAGAGT ATATCGCCGC AGGGCGTGTC ATGGTCAACG GGAAGGTGGT TCGCATTCCT
GGTACGCGCG TTGACCCGGA ACACGATGAG ATACTGGTCG ATGGCAGACC GATTGGGAAA
ATTCATCACC GCACCTATGT GATGCTCCAC AAACCTGCTG GCGTGGTCTC CACAACCGAC
GATCCGCAGG GTCGTCCAAC TGTCATCGAT CTGGTCAATC TGGAACAACG ATTGTTTCCG
GTAGGTCGGC TGGATTATGA CTCGGAAGGG TTGCTCCTGT TGACCGATGA TGGTGAACTG
ACCCAGAAAT TGACCCATCC GAGTTACCAG GTCGAAAAAG AGTACCGTGT GCTCTTGAAC
GAGGCGCCTT CACCGGCTGC GCTGCGTGCC TGGCGCACCG GTGTCGAACT TGACGGGGTG
AAAACTGCGC CTGCGTGGGT CGAGCTGATC GAACGCACGC CCGATGGCGC CTGGGTGCGC
GTCATCCTGC ACGAGGGGCG CAAGCGCCAG ATTCGTGAAG TGGCGCGCGT TTTGGGGTAT
GAGGTGCGGC GGTTGATCCG TGTACGCGAA GGTCCGCTGA CATTGGGCGA CCTTCCGAGC
GGTACATGGC GTTTTCTTAC TGATGAAGAG GTTGATATGT TGCGAGAACA CGCCGAACGA
AACGCGGCGG TCGCCGAAGC GGAACAGCCG CGTCGGCGTG AACAGGGTGA GACGCAGGTC
TCTGGCGGGC GCCGGTTGCG ACGCATTACT CCGTCGGCGC GATTGTTGCA GAAGGGCGAT
CAGGTGACGG ACACGACTCT CCCTGATCTC GATGAGGCGG TTGAAAGCGT TCAGCCGCCG
CCGGTCGTCG ATGAGAGGCG CAGTTCACGG GATAACGAGC GAATCCGCCA TGATGAACGT
CCGCCACGCG ATGTTCGCCA TTCCGGGCGG GATGGGTATG GCCGTGAGCA GCGCGACAGG
CGCGGTTCAG GCGATGGACG TGGCGATCGG CGGGACGAGC GGGGCGGCGG GTACCGGGAG
CGGCGCGATG AGCGGGGCGG CGGATACCGG GAGCGGCGGG AGGAGCGGGG GACGAGTGGA
CCGCGCGACT TCCGGCGGGA TGAGCGGGGC GGCGGGTACC GGGAGCGGCG GGAGGAGCGA
GGGGGGAATG GACCGCGCGA CTTCCGGCGG GATGAGCGGG GCGGCGGGTA CCGGGAGCGG
CGGGAGGAGC GAGGGGGGAA TGGACCGCGC GACTTCCGGC GGGATGAGCG GGGCGGCGGG
TACCGGGAGC GGCGGGAGGA GCGAGGGGGG AATGGACCAC GCGACTTCCG GCGGGACGAG
CGAAGCGGCG GGTACCGGGA GCGGCGGGAA GAGCGGGGGG CGAATGGACC GCGTGACTTC
CGGCGGGATG AGCGAGGCGG CGGGTACCGG GAGCGGCGGG AAGAGCGGGG GGCGAATGGA
CCGCGTGACT TCCGACGGGA CGAGCGAAGC GGCGGGTACC GGGAGCGGCG GGAGGAGCGG
GGGGCGAATG GACCGCGTGA CTTCCGGCGG GACGAGCGAG GCGGCGGGTA CCGGGAGCGG
CGGGAAGAGC GGGGGGCGAA TGGACCGCGT GATTTCCGAC GGAATGAGCG GGGCGGCGGG
TACCGGGAGC GGCGGGAAGA GCGGGGGGCG AATGGACCGC GTGATTTCCG ACGGGATGAG
CGGGGCGGCG GGTACCGGGA GCGGCGAGAC GAGCGGAGCG GGTATCGTGG AGAACGACGC
AATGATCGCG GCTCGCGGGG GTTTTCGGGC AATGATCGCC CTGCGCCACG TTCTCTCGAG
GAAGAAGAGG AGTAA
 
Protein sequence
MSAERLQKVL ASAGIASRRD CEEYIAAGRV MVNGKVVRIP GTRVDPEHDE ILVDGRPIGK 
IHHRTYVMLH KPAGVVSTTD DPQGRPTVID LVNLEQRLFP VGRLDYDSEG LLLLTDDGEL
TQKLTHPSYQ VEKEYRVLLN EAPSPAALRA WRTGVELDGV KTAPAWVELI ERTPDGAWVR
VILHEGRKRQ IREVARVLGY EVRRLIRVRE GPLTLGDLPS GTWRFLTDEE VDMLREHAER
NAAVAEAEQP RRREQGETQV SGGRRLRRIT PSARLLQKGD QVTDTTLPDL DEAVESVQPP
PVVDERRSSR DNERIRHDER PPRDVRHSGR DGYGREQRDR RGSGDGRGDR RDERGGGYRE
RRDERGGGYR ERREERGTSG PRDFRRDERG GGYRERREER GGNGPRDFRR DERGGGYRER
REERGGNGPR DFRRDERGGG YRERREERGG NGPRDFRRDE RSGGYRERRE ERGANGPRDF
RRDERGGGYR ERREERGANG PRDFRRDERS GGYRERREER GANGPRDFRR DERGGGYRER
REERGANGPR DFRRNERGGG YRERREERGA NGPRDFRRDE RGGGYRERRD ERSGYRGERR
NDRGSRGFSG NDRPAPRSLE EEEE