Gene RoseRS_4552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_4552 
Symbol 
ID5211537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp5709519 
End bp5710259 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content60% 
IMG OID640598130 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001278833 
Protein GI148658628 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCTGA AGGGTAAGGT TGCAATTGTG ACCGGCGCAG GTCACGGCAT TGGTAAAGCG 
ACCGCGATTG CCTTCGCTCG CGAAGGGGCG CACGTCGCCG TTGTTGACAT CAATATGGCC
GGCGCTGAAG CGACGGTGGC AGAGATTACC AGGCTGGACG GTCGAGCGCT TGCTGTCCAG
GCTGATGTCT CTCAGGCAGC GTCGGTGGAG TCGATGGTCG AAACGGTGCT GGCGTGGGGT
GGTCGGATCG ATGTGCTGCT CAACAATGCC GGTATTACGC GCGACGCTCG CCTGGTCAAA
ATGACCGAGC AGCAATGGGA CGCGGTGATC AATGTCAATC TCAAGGGCGT CTGGTTGTGC
GCGCGCGCCG TTGCGCCGCA CATGAGCGCT CAGGGGAGCG GCTCGATCAT TAACGTCAGT
TCTATCGTCG GGCTGTACGG CAACTTCGGT CAGTCGAACT ATGCCGCAAC CAAAGGCGGC
GTCATTGCAA TGACCAAGAC CTGGGCGCGG GAACTCGGTC CGTCGGGTGT GCGGGTCAAT
GCGGTCACGC CGGGATTCAT CGCTACTGAG ATGATTACGA CCATCCCGGA GAAGGTGATC
CAGACGGTCT GCGAACGCAC GCCGCTACGC CGACTCGGTA AGCCGGAAGA GGTCGCTGCA
GTGTATGTCT TCCTCGCGTC GGATGAATCG AGTTTTATGA CCGGTTCGGT CATTCAGGTG
GACGGCGGCT TGCTCTGGTA G
 
Protein sequence
MRLKGKVAIV TGAGHGIGKA TAIAFAREGA HVAVVDINMA GAEATVAEIT RLDGRALAVQ 
ADVSQAASVE SMVETVLAWG GRIDVLLNNA GITRDARLVK MTEQQWDAVI NVNLKGVWLC
ARAVAPHMSA QGSGSIINVS SIVGLYGNFG QSNYAATKGG VIAMTKTWAR ELGPSGVRVN
AVTPGFIATE MITTIPEKVI QTVCERTPLR RLGKPEEVAA VYVFLASDES SFMTGSVIQV
DGGLLW