Gene RoseRS_4330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_4330 
Symbol 
ID5211314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp5442373 
End bp5443404 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content56% 
IMG OID640597914 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001278618 
Protein GI148658413 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03640] CRISPR-associated endonuclease Cas1, DVULG subtype 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000958951 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.174892 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACGGC TGAACAATAC CCTTTACGTC ACCACGCCCG ATACCTATCT CTCGCTTGAC 
GGCGAGACTA TCGTTGTCAA GAAAGATGCT CACGTTTCAA CCCGACTGCC CCTCCATAAT
CTGGAAAACA TCGTCTGTTT CAACTACCAG GGGGTCAGTC CTGCCCTGAT GGGCGCCTGC
GTTGATCGCA ACATTGGACT GACATTTCTT GATGCAAACG GGCGATTTCA GGCACGGGTC
GGCGGCAGGA CACGCGGCAA CGTGCTGTTG CGCAAAAAAC AATACCGCAT ATCAGAGGAT
CGTGAATTAC GCGCAGCGAT TGCCACCTCA TTTATACAGG GAAAAGTTTA CAACTGTCGC
AAAGTGCTGG AACGCACGCT GCGCGATCAT ACGCTCCTGA TCGATGTCGA AGTCGTCAGG
AACGCATCGG CGGCGCTCAA GGAAGCGCTC ACGTCCATTT CCCGGTGCAG CAGCATAGAA
GCGCTGCTGG CAGTCGAAGG CAATGCTGCC AGCGTCTATT TTGGCGTTTT CGACCATCTC
GTCCTGCATC AAAAGGACGA CTTTCGCTTC GAGGAACGAT CACGTCGTCC GCCACGCAAC
AATATGAACG CACTGCTCTC GTTTCTGTAC ACCCTGCTGA CGAACGAAGC AGTTTCGGCA
CTGGAAACAG TTGGGCTTGA CCCCTATGTC GGCTTTCTGC ACACCGACCG ACCGGGTCGA
CCATCGCTCG CCCTCGACCT TATCGAGGAA CTACGACCGA TTTTCGCCGA CCGGATGGCG
CTTTCGCTGG TTAATCGCAA GCAGATCACG GCGAAAGGCT TCACATCCAA AGAGAGCGGC
GGAGTTGTGA TGGACGCCGA TACTCGCAAG GCCGTAATCG GTGCATGGCA GGAGCGGAAG
AAAGAGGAGA TTCTCCACCC TTTCCTGAAA GAGCGGATAC CTTTCGGTCT GATCCCGCAC
GTCCAGGCGA CGCTTCTGGC GCGGCATCTA CGGGGCGATC TCGACGCCTA CCCGCCGTTT
TTCTGGAACT GA
 
Protein sequence
MKRLNNTLYV TTPDTYLSLD GETIVVKKDA HVSTRLPLHN LENIVCFNYQ GVSPALMGAC 
VDRNIGLTFL DANGRFQARV GGRTRGNVLL RKKQYRISED RELRAAIATS FIQGKVYNCR
KVLERTLRDH TLLIDVEVVR NASAALKEAL TSISRCSSIE ALLAVEGNAA SVYFGVFDHL
VLHQKDDFRF EERSRRPPRN NMNALLSFLY TLLTNEAVSA LETVGLDPYV GFLHTDRPGR
PSLALDLIEE LRPIFADRMA LSLVNRKQIT AKGFTSKESG GVVMDADTRK AVIGAWQERK
KEEILHPFLK ERIPFGLIPH VQATLLARHL RGDLDAYPPF FWN