| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4302 |
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| Symbol | |
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| ID | 5211286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 5401790 |
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| End bp | 5403223 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640597888 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001278592 |
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| Protein GI | 148658387 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.358477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.503977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACGTG ATCGTGTGAT CACAGGCGTC GTAGCAGGTT TGACCGCTCT TGTACTGGCG
GCGTGTGGCG CACAGTCTGC TGCGCCTTCA CCGACCGTTG GTGCACCGAC GGCGGTCGCG
CCGACCGTCC CTGTGCCGAC GCTCGTGCCG TTACCGACCA GTCAACCGAT CCAGTTAGGC
GTCACCGGCA TCGGCGAAGT CAAGAGCGCG CAGGATGCCA ACCTGTCGTT CCAGGTGCAA
GGAACTGTCG CACAGGTGTT CGTCAAGGAA GGCGATATTG TCAAAAAGGG CGATCTGCTC
GCTATTCTCG ACACGCGCGC GTTCGATCAG CAACTGGAGC AGGCGAAAGC AGCGCTCGCC
AACGCACTGG CGCAGGAAGC TGCGCTGACC GAAGCGCCGC GCCAGGTGGA TCTCAACGCA
GCGCGCGCCG CCGTCGCGCA GGCGCAGGCG GCGCTCGAGG CGCTGCAACG CGGACCGAAG
GAGCAGGATA TTCGTATGGC AGAGGCGGCG CTCGCGGCAG CCGAAGCCAA TCTGCAAGCC
ACCCGCGACC GTCTCTCGTT CGCCAAGACC CAGGCTGAGA TCCAGATGGA ACAGGCGGCG
GCAGCGCTGA CACAGGCGCA GGCGCGGTAT GCGCAGGCGA AGTATAACTG GGAGTATGCA
CGCGATACCG GCAACGACCC GATCGTTCCC GAAGTGGCAG CGCCCAACGG TCAGCGCGTG
CCCAACAAAC TGAGCGATGG GCAGCGCGAA AACTACTATG CCCAGTTCGT CCAGGCGGAA
GCCGGATTGC GCCAGGCGGA AAAGGCGCTC GAACTGGCGG TGAAGGGCGC CGAGAGCGCG
CGCCAGGCGG AAGTGACCGG CATCCGGGCA GCGGAAGCGC AGGTCGAACA GGCGCGCCTG
ACTCTCGAAA AACTCCGGTT GCCGCCCGAT CCGGACCGGC TTGCGGCAGC CAGGGCAGCG
CTGGCGCAGG CGCGCGCCCA GGAAGCGCGT ATTGTGCCAG ATCCGCGTGA ATCGCAGAAA
GCCGCAGCGC GCGCAGCGGT GGAACAGGCG CAGGCGGCGC TGACGCTGGC GCAGATCAAC
CGCGAACGCG CTGAACTGCG CGCGCCGTTC GATGGCGTTA TCTCGATTGT CTCCATCGAT
CCTGGCGATC CGAGCGTGAC CCAGGGGCTG CCGGCGATCC AGATCATCGA TATGAGCAGC
CTCTACGTCG ATGTCCAGAT CAGCGACACG GATATCGTCC GGGTGCGTGA AGGGCAATCG
GCGAAGGTGA CCGTCAGCAG CATTCCCGAC CGCGAATACA CCGGCAAGGT CGAATTCATC
GCTCCAACCG CGACGGTGCA GGGATTGTCG CGCAGTTATC GGGTGCGCAT CGCGCTGGAC
GATATCACCG GGCTGCGGGC TGGCATGAGC GCGCGGGTCG ATATTCTGGA ATAA
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| Protein sequence | MKRDRVITGV VAGLTALVLA ACGAQSAAPS PTVGAPTAVA PTVPVPTLVP LPTSQPIQLG
VTGIGEVKSA QDANLSFQVQ GTVAQVFVKE GDIVKKGDLL AILDTRAFDQ QLEQAKAALA
NALAQEAALT EAPRQVDLNA ARAAVAQAQA ALEALQRGPK EQDIRMAEAA LAAAEANLQA
TRDRLSFAKT QAEIQMEQAA AALTQAQARY AQAKYNWEYA RDTGNDPIVP EVAAPNGQRV
PNKLSDGQRE NYYAQFVQAE AGLRQAEKAL ELAVKGAESA RQAEVTGIRA AEAQVEQARL
TLEKLRLPPD PDRLAAARAA LAQARAQEAR IVPDPRESQK AAARAAVEQA QAALTLAQIN
RERAELRAPF DGVISIVSID PGDPSVTQGL PAIQIIDMSS LYVDVQISDT DIVRVREGQS
AKVTVSSIPD REYTGKVEFI APTATVQGLS RSYRVRIALD DITGLRAGMS ARVDILE
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