| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4199 |
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| Symbol | |
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| ID | 5211184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 5259455 |
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| End bp | 5261143 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640597788 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001278492 |
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| Protein GI | 148658287 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00362058 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACATCG CCGATAGCGT CCCCGATCCG GCTAACCCTG TTGCTCTCAC CGACTGCCTG
GCGCAGATGG AACGTTTGCA GCGTATTGTG GAGACCAGTA ATCAACTTAT GTTCGAAGTT
GATCCTGGCG GTCGCTTTAC CTGCGTGAAT CAGGCAGCCT CCACCTACTT TGGGGTGGCG
CCAGCCGCGT GTCCTGGTCA ACCGGTGACA GCGTTCGTCC ATCCTGATGA TCATGAAAAA
GTGCGGCAAT GGTTTTCGGA ACGGAGCGCG AACCAACAGC GACATCTTTC GGAGGAGATT
CGAGTCGTTC ATCGTCACGG CGCTCTCTTC CATATGCTCT GGAGAATGAC ATTCCACAGG
GATGATACAG GACGCCTCCA ATCGATAACT GTCATCACGC ACGACATCAC TGAAATGAAA
CGGCAGGAAG AGACGCAGCG CGCTTTTCGG CTGTTCATTG AGAACTCGCC TGACGGCTTT
GCGATCGTCG ACCAGAATCT TCGACTGACG TATACCAATC ATGCATTCAA TGCCATGCTC
GACGAGCCGT CGCTGGTCGG GCGGTCGGTT GTCGAACTGG TGTGCGCAGA CGATCACGCG
ACGCTGGTAA CAGCCGCCAG AACAGCAGAG CGTGGTCAGG CGGCATGGGA CATTGTTCGC
TACGTGCGCA GTGACGGAAC GTTGATAACA GTCCATACGG GAATAATCGG GTTGTGCGAT
CACCAGGGCA ACCTCATCGC CTATGCTCTG GTCAACCGTG ATATGACTTC CCAATTGCAA
GCCGAAACAG AATTGCGCCG GAGCGAGCAA CGGAATCGCG CTCTGCTGGC GGCAATACCC
GATCTGATGT TCGTGCTGAG CGCTGATGGC ATCTTTCTTG ATTACAAGGC TGATAAGCTG
CTCTTGCCGC CAGAGGCGTT TCTCAACCGC CACGTCAATG AGGTGCTTCC ACCGCCGCTT
GCAGCCCAGG CGCTTTCCCA TCTCGAGTGT CTCAAACGCA CCGGCGAAAT GCAGGTGTAT
GAGTATCAAA TTGAGTTTAT GGGACAGATC GAAGAGTACG AAGCGCGGAT GGTACCGCTC
CAGGATAGCG CCCTTGTGCT GGCTCGCGAC GTCACGGCTC ATCGTCGCGC CGAGCGCGAA
CGGGTGGCGA TGCAGGAGCA GATTATTCAA GCTCAGCAGG CCGCCCTCCG CGAACTGAGC
ACGCCGTTGA TGCCAATCGC CGACGGGGTG GTGGTGATGC CATTGATTGG GGTGATCGAC
TCGGCTCGTG CGCAACAGAT TATGGAGAGT TTGCTGAACG GCGTGTCCGA GTATAAGGCG
CACGTCGCTC TGATAGACAT CACTGGCGTG AAAGTCGTTG ACACCCAGGT CGCCGGAGTG
CTCCTGCGCG CTGCTCAGGC AGTCCGCATG CTGGGCGCAC AGGTGGTTTT GACCGGTATC
AGCCCGGAGA TCGCCCAGAC ACTGGTGCAT ATCGGCGCCG AGATCCGTGA CGTTAAAACA
AAGGCGACCC TCCAGGAGGG AATTCGCTAT GCCATGACGG TCGGGAACCG AATCATGAGC
GCCAGTAAGT GGTTCACCCT CCGCCATGCA GCAGCGCCCG TGCAGGCGTT TGCGTGCCAG
AAGATGAACT CGTCAGAAGC GCAAGGACGG ACGAAGGTGC GACCTTCGCC CGTCCAGGAT
GCAGGATGA
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| Protein sequence | MNIADSVPDP ANPVALTDCL AQMERLQRIV ETSNQLMFEV DPGGRFTCVN QAASTYFGVA
PAACPGQPVT AFVHPDDHEK VRQWFSERSA NQQRHLSEEI RVVHRHGALF HMLWRMTFHR
DDTGRLQSIT VITHDITEMK RQEETQRAFR LFIENSPDGF AIVDQNLRLT YTNHAFNAML
DEPSLVGRSV VELVCADDHA TLVTAARTAE RGQAAWDIVR YVRSDGTLIT VHTGIIGLCD
HQGNLIAYAL VNRDMTSQLQ AETELRRSEQ RNRALLAAIP DLMFVLSADG IFLDYKADKL
LLPPEAFLNR HVNEVLPPPL AAQALSHLEC LKRTGEMQVY EYQIEFMGQI EEYEARMVPL
QDSALVLARD VTAHRRAERE RVAMQEQIIQ AQQAALRELS TPLMPIADGV VVMPLIGVID
SARAQQIMES LLNGVSEYKA HVALIDITGV KVVDTQVAGV LLRAAQAVRM LGAQVVLTGI
SPEIAQTLVH IGAEIRDVKT KATLQEGIRY AMTVGNRIMS ASKWFTLRHA AAPVQAFACQ
KMNSSEAQGR TKVRPSPVQD AG
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