| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4089 |
|---|
| Symbol | |
|---|
| ID | 5211072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5128348 |
|---|
| End bp | 5130960 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640597677 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001278383 |
|---|
| Protein GI | 148658178 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.591422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.870036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATTT CCCCTCCGAC CGACGATGTC GTCATCAGTG TGCGCAACGT CGGTAAGATG
TACCGCATCT ACGACCATCC GCAGGACCGA CTCAAGCACA TGCTGCTGTG GCGTTTCGGG
CGGCATTACG GGCGCGAATT CTGGGCGCTG CGCAATGTCA GTTTCGAGGT GCGGCGCGGT
GAGATGGTGG GGATCATCGG GCGGAACGGG AGCGGCAAGA GCACGCTGTT GCAGATCATC
GCCGGCACGC TGGCGCCGAC TGAAGGCGAG GTGCAGGTGA AGGGGCGGGT GGCGGCGCTG
CTGGAGTTGG GGAGCGGCTT CAACCCGGAG TTCACGGGGC GCGAGAATGT GTATCTCAAC
GGTGCGATCC TGGGGTTGAG CCGGGAGGAG ATCGATGCAC GCTTCGATGA CATTGCCGCA
TTCGCGGACA TCGGCGAGTT TATCGATCAG CCGGTGAAGT TCTACTCCAG CGGCATGGTG
GTGCGGCTGG CGTTTGCAGT GCAGGTGCAT GTCTCTCCCG ATATCCTGAT CGTCGATGAA
GCGCTGGCTG TGGGGGATAT TGCGTTTCAG TCGCGCTGTC TTGACAAGAT CAAGCAACTG
ACCGATTGTG GTGTTACGAT TGTATTTGTT ACGCATGACA TCGGGACATT TCAGAACCTG
TGCACTTATG GATATCTACT TCACCATGGA ATGCTGTTTA GCAGCGGTCG ACCTGCCCAG
GTTGCGATGC AGTACTACGA ACTGATGCGA GAGAGTGAGC ATGCCCGCCA GCGCCTGATG
GCGTCACCTG GCGACGCCGA AGAGGTGCAG CATGAACTGC GTCGCCGCGA GGAGGAGATC
AAACGAAAGA CTGGTGCAGG CGAGTACCGG TTTGGTACGG GCGCAGCACG AATTGTGGAC
TATTGTGTGC TGGATACGGA AGGTCGCGAG ACGGCCTCTC TTTTTGTCGG CAAACCTTTT
CGGGTGGTGA CGACGATTGA GTTTTATGAT CATGTCGAGA ATATTGCGAT TGGTATTATG
TTTCGTAACG CGCAGGGGCA GAACCTTATG GGGATGCACT CCTATATAGA GCACCGTGTT
AATTTCGGTC CGCACGATGC CGGTGAGCGT CTGGAGATCG GTTGTGAACA GATCATGCTC
CTCAATCCCG GAGACTATCT TCTCAATATC GGTATTGCTG ATTTCCGCAG CGATTATGAC
TTTACCAACC TTGACTCTCG CAATAACCTG ATGAAGGTGA CGGTGGCTGG CAAGCCGCTC
GGATACGGGT TGATCCATAC ACGTCCGCTA TTCTGGAGTG GTGGCAGAAC GCCAGTTCAA
TCCTGGCAGA GTATGGCGTG GAAGTCGTGG GAGGAGTGGA CGCTGGAGCG TTGTGAAAAA
TATGCGCCCG ATGCGCGTCG TATTCTGGAG ATCGGTGGTC AGGGCGCGGA ACTGGCGCGG
TTTCTTGCTC AACGGGATCG TCAGTTGACG ACGCTGAATT TTCCAACCGG CGATATTTGC
CGTCCGACGC CTTATGTCGA TAGCGCATTC GATCTGATTG TATGTAAAAT GACATTCGAG
CATCTGTACG ATCCGTTCGC CGCTGCCGCC GAAATAACCC GATTGCTGGC GCCGGGCGGT
ATCTTGTTAC TCTCAACCGT ATGGTCCTGG CGGTATCACA CGGCGTCGGG CTTTGATGAT
TACTGGCGCT TTTCGACTGC GGGGCTTATG CAACTCTTTC CGCGCCTTAC AATCGTTGAA
ACAGGATATG ATCTGGACGA TCGGCGCAAA GATTGTCGCT TTGATGGGGT GCCGGTAGAT
GAACTTGGCG GGTGGCGTGA GCACTGGTAC GTGTACCTTG TCGCAAAAAA GCCGGACATT
TCAGAATCCT TGTCAGATCA GGTCATGCCA TACCGTTTTC CGCGTCACGT TCTCAATTAC
ACCCTCAATG ACATCAAAAC GATATACGAA TCGATTCTCG CAGATCCTGT TATCCAACCT
GTTATCGACG AGATTATGAG TCATACGAAT GAATCAGTGC GAGAAAGGGG TATTGCGAGT
GGTGCAACTG AAGAGCGCGC TTTGCCCGGC GATCCACAAT TCGTATCGAC AGGCTATTAT
CGAATGATGC TCGGTCGGTA TGCGTTCGCG GGTGCAATGT TTTGTCGTGG CGCCGAAGTT
CTTGACGCAG GAAGCGGGTT GGGATGGGGC GCATTTCTGG TGTCGCATTT CGCGCGAAGG
GTAACTGCTT TTGATAGAGA GCCGGAACTT GTTGCTTTTT GCCGGGAAAT CTGGCGTGCG
CAAAACATTC TCTGGTCTGT CGGTGATATG TGTGACCTCT CGTTTTTGAC CGACATGCGC
TATGATGTTG TGCTTGGTAT GGAAGTTATT GAGCACCTTT CCCGTGATGA TGGCGAGCGG
TATATTGCTG AAGCGGCGCG CGTGGTGCGT CCTGGAGGTG TTTTTATCGG CACTTCATAT
TTTCCTGTGA GTCGTGATGA GGCGCTGGCT GCGCAGGCTA ACAATCCTGC GCATCTGCAT
ATTTTTACGT CTGATGAGAT GCTGATGCTT CTTCGCCGGT ACTTCAGTAA TGCGGTCATT
ATCGGTTCCT GGATGTTTAT TGCAGTGAGG TGA
|
|---|
| Protein sequence | MPISPPTDDV VISVRNVGKM YRIYDHPQDR LKHMLLWRFG RHYGREFWAL RNVSFEVRRG
EMVGIIGRNG SGKSTLLQII AGTLAPTEGE VQVKGRVAAL LELGSGFNPE FTGRENVYLN
GAILGLSREE IDARFDDIAA FADIGEFIDQ PVKFYSSGMV VRLAFAVQVH VSPDILIVDE
ALAVGDIAFQ SRCLDKIKQL TDCGVTIVFV THDIGTFQNL CTYGYLLHHG MLFSSGRPAQ
VAMQYYELMR ESEHARQRLM ASPGDAEEVQ HELRRREEEI KRKTGAGEYR FGTGAARIVD
YCVLDTEGRE TASLFVGKPF RVVTTIEFYD HVENIAIGIM FRNAQGQNLM GMHSYIEHRV
NFGPHDAGER LEIGCEQIML LNPGDYLLNI GIADFRSDYD FTNLDSRNNL MKVTVAGKPL
GYGLIHTRPL FWSGGRTPVQ SWQSMAWKSW EEWTLERCEK YAPDARRILE IGGQGAELAR
FLAQRDRQLT TLNFPTGDIC RPTPYVDSAF DLIVCKMTFE HLYDPFAAAA EITRLLAPGG
ILLLSTVWSW RYHTASGFDD YWRFSTAGLM QLFPRLTIVE TGYDLDDRRK DCRFDGVPVD
ELGGWREHWY VYLVAKKPDI SESLSDQVMP YRFPRHVLNY TLNDIKTIYE SILADPVIQP
VIDEIMSHTN ESVRERGIAS GATEERALPG DPQFVSTGYY RMMLGRYAFA GAMFCRGAEV
LDAGSGLGWG AFLVSHFARR VTAFDREPEL VAFCREIWRA QNILWSVGDM CDLSFLTDMR
YDVVLGMEVI EHLSRDDGER YIAEAARVVR PGGVFIGTSY FPVSRDEALA AQANNPAHLH
IFTSDEMLML LRRYFSNAVI IGSWMFIAVR
|
|---|
| |