| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3816 |
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| Symbol | |
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| ID | 5210798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4773117 |
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| End bp | 4775510 |
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| Gene Length | 2394 bp |
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| Protein Length | 797 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640597412 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001278120 |
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| Protein GI | 148657915 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.250791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.392847 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTCC TCGCGCATGA TGAACACACC GTTGCACTGC TGCAAGCCGT GATCGAGACG
ACCTCCGAAG CTGTGCTGGT CACCGATGGC ACAGGAAAGA TCCTGCTGCT GAATCAACGA
TTCGAGGATC TGTGGCGATT GACGCCAGGG TGGTTGGAGA CGATCACCTC GCGTGACCGC
ATGCAGCATC TGGCAACCCT GGTCAGCGAT GGAGAACAGT TTCTCGTCCG CGTCGAAGAA
CTGTACGCCG ATCCCAATCT CGAGGTGATT GACTGGCTGA CGTTACGCGA CGGTCGGATC
ATCGAGCGCT ACACCTGCGG AATGCGCCTC GATCCGCAAC GCACCGTCCG GATCTGGCTG
TTTCGCGACA TCACCTCACG GGAGCGCGCG CAACACGAAC TCAAGGTGAT GAAGAGCGTC
CTTGAGGCGC TCAATCGGAT CATTGAACCG CAGCGTCAAT TACAGGCTGG ATTACGTGCG
TTGGTTCGAG AAACGGGCGC GCGCGCGGCG TGGCTCTGGG GAGTGGAGGG AAGCGATTCT
GCCCGCCTGC TGGCGCACGA GGGCGCACGT GAACTCCAGA TCGACCTCAC GCCGCGCGCC
CCCGGCGATC CGTGCGAGTG TCTGCAGCGC CTGATCCATC ACGAGTTCCC TTCGGCTGCC
CATCCGATCA CCTGCCCTCG TCTCGCGCAT CTGCACGACG CAGATCAGGA ACCTGCGCAG
CATATCAGCA TCCCGATCTA TAGCCGTGAT CGCCCACTGG CGATACTGAA CCTGGTCATG
CCTGCTGGCA GTTCGTTTGG GGTTGTTGAG CAACGCATGT TTGCCGCCAT CGCCAATCAA
TTCAGCGTGG CGATCGAGCG CGCGCGCCTC TTCGAGTCGG TGCGTGAAGA ACAGCGCACC
GCCGAGGTGT TGCGGCAGGC ATCGGCAACA CTGAGCGCTC TGCTGGATGT CGAACAGGTG
CTCGATCACG TCCTCGATCA GATCGTCGCC CTCATGCCGT GTGATGGCGC CTCGGTCATG
CTGGTCGAAG GAATGCAGGC GCGTGTGGTG CGGGTGTATG GCTACGAAAA ACTGAGCGAT
GAGACAGGAC GCGCGCTCCA CCAGGTGACC TTCGAGATTG CGCGTACACC AACACTGCGA
CGTCTGATCG AGACCGGTCA GCCCTGGATC ATCCACGAAA CGCTCAATAA TCCAGCCTGG
GTGCGTATCG AGCAGGCATT CCCGATCCGT TCATGGCTCG GCGCGCCGGT CATTGTACGC
CAGCAGACCG TCGCCTTCAT TTGCGTCGAT AGTTTTACCC CTTATTCCTT CCGCCCTGAA
CACGCGCGTC GATTGGCGAC GCTGGCATCG GGCGTTTCGC TTGCGCTGCA AAACGCACAG
TTGTACGCCC AGGCGTACGA GGCGCTGGAA CGTGAGCGTC GTCTGGGCGA TCTGACGCGC
ACAATCAGCA GTGCGCTCGA CATCGACGTC ATTCTCGATA GTGTTGTGCG TTTGTCGGTT
GAACTGGTCG GCGCCGATGC CGCCGCGCTG GGGTTGCTCT CCCCAGATCA CCGAATCCTT
GCCAGAACAC ACACCTTCAA CATGCCAGAG GCGTTGATGA CGCTCAAGCA AGGTATCGAG
CCGGTATGGG AAGCAATCGA GCGGCAGCGG ATCATCATCC GGCATCGTGT GGTTTATGCG
CATGCCGGTG AAATCAAATC GATCCCGTCC GTTCTGGGAG CGCCGGTCGT TGCTGGCGAC
CGGATGCTCG GCGTGCTGGC AGTCTATCAT CTGCACGACC ACAGCCACTT TAGCGAACGA
GACGGCGCTA TGCTCGAGAT CGTCGGGCGT CAGACCGGGA TTGCCATCAC GAACGCGCAA
CTTTTTACCG AAACGCAGCG CCTGGCAACC ACCGATCAAC TCACCGGTCT GTTCAATCGC
TACCACTTCT TTGCACTTGC GCCGCGCGAG TTGGAACGGG CGCGGCGCTA CCGGCACGAT
GTCGCGCTGC TGATCATCGA TGTCGATCAT TTCAAAACCA TCAACGACAC CTACGGGCAT
GTCGCTGGCG ATACGGTGTT GCAGCACATC GCCGATCACA TGCGGCGTGA ACTGCGTGAC
GCCGACATTC TGGCGCGCTT CGGCGGCGAG GAATTCATCG CACTTCTGCC CGAAACGAAC
CTGACCGGTG CGTTGCGGGT CGCCGGGAGG TTACGCGCAA CAATCGAAGC CAACCCTGTG
CCTTTGAACG GGCAATCCAT TCGTGCGACC ATCAGCGTCG GATGCGCTTC GCTCCATCCT
GCCACCAGAG ATGAACATCT GGATACGCTA ATCCAGCGCG CCGATCGCGC ACTCTACACC
GCCAAAGCGG GTGGTCGGAA TCAGGTGGCG TCAGATGCGT CATATGGAGA TTGA
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| Protein sequence | MTFLAHDEHT VALLQAVIET TSEAVLVTDG TGKILLLNQR FEDLWRLTPG WLETITSRDR
MQHLATLVSD GEQFLVRVEE LYADPNLEVI DWLTLRDGRI IERYTCGMRL DPQRTVRIWL
FRDITSRERA QHELKVMKSV LEALNRIIEP QRQLQAGLRA LVRETGARAA WLWGVEGSDS
ARLLAHEGAR ELQIDLTPRA PGDPCECLQR LIHHEFPSAA HPITCPRLAH LHDADQEPAQ
HISIPIYSRD RPLAILNLVM PAGSSFGVVE QRMFAAIANQ FSVAIERARL FESVREEQRT
AEVLRQASAT LSALLDVEQV LDHVLDQIVA LMPCDGASVM LVEGMQARVV RVYGYEKLSD
ETGRALHQVT FEIARTPTLR RLIETGQPWI IHETLNNPAW VRIEQAFPIR SWLGAPVIVR
QQTVAFICVD SFTPYSFRPE HARRLATLAS GVSLALQNAQ LYAQAYEALE RERRLGDLTR
TISSALDIDV ILDSVVRLSV ELVGADAAAL GLLSPDHRIL ARTHTFNMPE ALMTLKQGIE
PVWEAIERQR IIIRHRVVYA HAGEIKSIPS VLGAPVVAGD RMLGVLAVYH LHDHSHFSER
DGAMLEIVGR QTGIAITNAQ LFTETQRLAT TDQLTGLFNR YHFFALAPRE LERARRYRHD
VALLIIDVDH FKTINDTYGH VAGDTVLQHI ADHMRRELRD ADILARFGGE EFIALLPETN
LTGALRVAGR LRATIEANPV PLNGQSIRAT ISVGCASLHP ATRDEHLDTL IQRADRALYT
AKAGGRNQVA SDASYGD
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