Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3805 |
Symbol | |
ID | 5210787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 4759434 |
End bp | 4760474 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640597401 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001278109 |
Protein GI | 148657904 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGTTA TTGCTTCCGA CACCCACCTG CAGCACAATC CGCCGCACGA GTTTCTCGAT GGCGCGCTGG TTCCGATCTT CGAGACACCC GCACGCGTTG CGATTATTCG CGCTGCGCTC GAACGTGCCG CCATCGGACC GATCGTTGCA CCGCGATCGT TCGGGATCGA ACCGGTGCGC GCCGTTCACG ACGACGGATA TCTGACCTAT CTTGAGACGA TCTACGACCG CTGGGTTGTT GCAGGCGGCG CGCCTGAGGC CGTCATTCCC GGCACACTGG CGGTGCGCTG GATGACCCGA CCGCATACTC ATCCGCTTGC TGCTCCGGGG TATTATACGT TCGATACATG CGCGCCAATC GTGGCGGGCA CCTATGCAGC AGCACGCGCT GCGGCGGATA TCGCGCTCAC CGGCGCCGAT CGATTGCTGG CAGGAGAACG TTGCGTGTAT GCGCTCTGCC GCCCACCGGG GCACCATGCC GGACGCGATC TCTGCGGCGG GTACTGTTTT CTGAACAATG CCGCAATTGC TGCCGAATAT CTCATCCGCA ACGCCGCAGG CGCAACCTGT GCGATCCTCG ATATCGATGT TCACCACGGC AATGGCACCC AGCAGATCTT TTACGAACGC AACGATGTGC TGTTCGTGTC GATCCATGCG TCGCCGGATT ACCAGTACCC CTTTTTCCTG GGCTATGCTG ACGAGCGCGG TGCAGGCGCT GGAGAGGGGT ATAATCTGAA CCTGCCACTG GCGGCTGGCG TGGGTAACCG CGAGTATCTG TTGGCGCTCG ACCAGGCGTT GCGCGCGATT GCGGATTTTG CACCACGTTT CCTGGTGCTC TCGGCAGGGT TCGATACCTT TGCAGGCGAT CCGGTCGCCG GGCACGGCGG CGGCTTTGCG CTCAGTATGG CAGTGTATCC GCAGATCGGG CGCCACATCG CTGCGCTCAA CCTGCCGACG CTGGTCGTTC AGGAGGGAGG GTACGCTATT GAAGCGCTCG GCGACAACGT CGTCGGGCTG TTGCAGGGTC TTGAGGAGTG A
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Protein sequence | MIVIASDTHL QHNPPHEFLD GALVPIFETP ARVAIIRAAL ERAAIGPIVA PRSFGIEPVR AVHDDGYLTY LETIYDRWVV AGGAPEAVIP GTLAVRWMTR PHTHPLAAPG YYTFDTCAPI VAGTYAAARA AADIALTGAD RLLAGERCVY ALCRPPGHHA GRDLCGGYCF LNNAAIAAEY LIRNAAGATC AILDIDVHHG NGTQQIFYER NDVLFVSIHA SPDYQYPFFL GYADERGAGA GEGYNLNLPL AAGVGNREYL LALDQALRAI ADFAPRFLVL SAGFDTFAGD PVAGHGGGFA LSMAVYPQIG RHIAALNLPT LVVQEGGYAI EALGDNVVGL LQGLEE
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