Gene RoseRS_3805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3805 
Symbol 
ID5210787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4759434 
End bp4760474 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content62% 
IMG OID640597401 
Producthistone deacetylase superfamily protein 
Protein accessionYP_001278109 
Protein GI148657904 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGTTA TTGCTTCCGA CACCCACCTG CAGCACAATC CGCCGCACGA GTTTCTCGAT 
GGCGCGCTGG TTCCGATCTT CGAGACACCC GCACGCGTTG CGATTATTCG CGCTGCGCTC
GAACGTGCCG CCATCGGACC GATCGTTGCA CCGCGATCGT TCGGGATCGA ACCGGTGCGC
GCCGTTCACG ACGACGGATA TCTGACCTAT CTTGAGACGA TCTACGACCG CTGGGTTGTT
GCAGGCGGCG CGCCTGAGGC CGTCATTCCC GGCACACTGG CGGTGCGCTG GATGACCCGA
CCGCATACTC ATCCGCTTGC TGCTCCGGGG TATTATACGT TCGATACATG CGCGCCAATC
GTGGCGGGCA CCTATGCAGC AGCACGCGCT GCGGCGGATA TCGCGCTCAC CGGCGCCGAT
CGATTGCTGG CAGGAGAACG TTGCGTGTAT GCGCTCTGCC GCCCACCGGG GCACCATGCC
GGACGCGATC TCTGCGGCGG GTACTGTTTT CTGAACAATG CCGCAATTGC TGCCGAATAT
CTCATCCGCA ACGCCGCAGG CGCAACCTGT GCGATCCTCG ATATCGATGT TCACCACGGC
AATGGCACCC AGCAGATCTT TTACGAACGC AACGATGTGC TGTTCGTGTC GATCCATGCG
TCGCCGGATT ACCAGTACCC CTTTTTCCTG GGCTATGCTG ACGAGCGCGG TGCAGGCGCT
GGAGAGGGGT ATAATCTGAA CCTGCCACTG GCGGCTGGCG TGGGTAACCG CGAGTATCTG
TTGGCGCTCG ACCAGGCGTT GCGCGCGATT GCGGATTTTG CACCACGTTT CCTGGTGCTC
TCGGCAGGGT TCGATACCTT TGCAGGCGAT CCGGTCGCCG GGCACGGCGG CGGCTTTGCG
CTCAGTATGG CAGTGTATCC GCAGATCGGG CGCCACATCG CTGCGCTCAA CCTGCCGACG
CTGGTCGTTC AGGAGGGAGG GTACGCTATT GAAGCGCTCG GCGACAACGT CGTCGGGCTG
TTGCAGGGTC TTGAGGAGTG A
 
Protein sequence
MIVIASDTHL QHNPPHEFLD GALVPIFETP ARVAIIRAAL ERAAIGPIVA PRSFGIEPVR 
AVHDDGYLTY LETIYDRWVV AGGAPEAVIP GTLAVRWMTR PHTHPLAAPG YYTFDTCAPI
VAGTYAAARA AADIALTGAD RLLAGERCVY ALCRPPGHHA GRDLCGGYCF LNNAAIAAEY
LIRNAAGATC AILDIDVHHG NGTQQIFYER NDVLFVSIHA SPDYQYPFFL GYADERGAGA
GEGYNLNLPL AAGVGNREYL LALDQALRAI ADFAPRFLVL SAGFDTFAGD PVAGHGGGFA
LSMAVYPQIG RHIAALNLPT LVVQEGGYAI EALGDNVVGL LQGLEE