| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3675 |
|---|
| Symbol | |
|---|
| ID | 5210654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4604959 |
|---|
| End bp | 4606212 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640597269 |
|---|
| Product | NADH dehydrogenase I, D subunit |
|---|
| Protein accession | YP_001277980 |
|---|
| Protein GI | 148657775 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0132867 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCG CCGAAATCCG CGCACGCAAT CTGAGCATTC CCGCACCCAG TCAGATCACT
CGTCCGGCGC TTGCCGGAGA GAAAGAGACC ATGGTGCTGA ATATGGGTCC CCACCACCCA
AGCACCCACG GCGTGCTGCG ACTGGTCGTT GAACTGGATG GCGAAACGGT TGTCGATGTT
GCGCCAGACA TCGGGTTCCT GCACACCGGC ATCGAAAAAA CGATGGAGAG CAAGACGTAC
CAGAAAGCGG TGGTGCTGAC CGACCGCACC GATTATCTGG CGCCGCTCTC CAATAATCTG
AGTTATGTGC TGGCAGTCGA AAAACTGCTC GGTTGCGAAG TTCCAGAGCG CGCTACCGTT
GCACGGGTGC TGCTGGTGGA ACTGCAACGG ATCGCCAGCC ATCTGGTATG GCTTGGCACC
CATGCGCTCG ATCTGGCGGC GATGAGCGTC TTCCTCTACG GTTTCCGTGA ACGCGAACAG
ATCCTCGATA TTTTCGAACT GGTCTCAGGC GCACGTATGA TGACCAGTTA CTTCCGGGTT
GGAGGGCTGG CGTATGATCT GCCTGCCGGG TTCGATGCAG CCGTCGAGGC ATTTCTGCAG
ATCATGCCGG GGCGGATCGA TGAATACGAA GCTCTGTTGA CCGACAATCC GCTGTGGATC
GAGCGCACGC AGGGGATCGG CGCGATCGAC AGCGAAGCGG CGATTGCCCT GGGATTGACC
GGACCGGGCT TGCGCGCCAC CGGAGTAGCG TGGGACCTGC GTAAAACGAT GCCGTACTGC
GGCTACGAAA CCTATTCGTT CGCCATTCCG ACCGCCACTC ACGGCGATAT TTATGACCGC
TACCTGGTGC GGATGGCGGA GATGCGCGAA AGCGTCTCTA TCTGCCGCCA GGCGTTGCAA
CGTCTGCGCG ATATAGGTCC CGGACCCTAC ATGACGTCGG ATCGCAAAAT CGCGCCGCCG
CCGAAGAGCG AAATCACGCA GAGCATGGAA GCGCTCATCC ACCATTTCAA ACTATGGACG
GAAGGATTCA AACCGCCGCG CGGCGACGCA CTGGCAGCAG TTGAATCACC GCGTGGAGAA
CTTGCAACCT ACATCGTCAG CGATGGCAGC GCCAAACCCT ACCGTGTCCA CTTCCGTGCG
CCTTCGTTCG TCAACCTGCA ATCGCTGCCC CACATGGCGC GCGGTCATCT TGTCGCCGAC
CTGGTGGCGC TGATTGCATC CCTCGACCCG GTACTCGGAG AAGTTGATCG ATAA
|
|---|
| Protein sequence | MTVAEIRARN LSIPAPSQIT RPALAGEKET MVLNMGPHHP STHGVLRLVV ELDGETVVDV
APDIGFLHTG IEKTMESKTY QKAVVLTDRT DYLAPLSNNL SYVLAVEKLL GCEVPERATV
ARVLLVELQR IASHLVWLGT HALDLAAMSV FLYGFREREQ ILDIFELVSG ARMMTSYFRV
GGLAYDLPAG FDAAVEAFLQ IMPGRIDEYE ALLTDNPLWI ERTQGIGAID SEAAIALGLT
GPGLRATGVA WDLRKTMPYC GYETYSFAIP TATHGDIYDR YLVRMAEMRE SVSICRQALQ
RLRDIGPGPY MTSDRKIAPP PKSEITQSME ALIHHFKLWT EGFKPPRGDA LAAVESPRGE
LATYIVSDGS AKPYRVHFRA PSFVNLQSLP HMARGHLVAD LVALIASLDP VLGEVDR
|
|---|
| |