| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3660 |
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| Symbol | |
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| ID | 5210638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4578722 |
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| End bp | 4582519 |
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| Gene Length | 3798 bp |
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| Protein Length | 1265 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640597253 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001277965 |
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| Protein GI | 148657760 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.593932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGTGA CCACCTGTGC TACTGTGCTT GCAGAAATCA CCGCCATTGC GCCAGTGCAG
GACCTGATTG CAACGCTGCA CGCTCATCGG GGGGCGCGCC TGCATATCGC GCCGACGCCA
GGCGCAGCGC GGACGCCGCT GGTTGCCGCC TTTACCCTCC AGGGCGTTGC GCCGCTGCTG
TACCTTGTGG GCACAACCGA TGCGGCGCTG CGCGCGCATG AAGATCTGCG GCAGTGGATC
GGCACAGATC GGGTATTCCT GTTTCCGGCG AGCGATGCGC TTCCGTATGA GCATATGTCA
ACCGGCGCCG ACATTCTGAC GGCGCGGTTG CGTGTGCTGC ATCGCCTGGC GGCGTTCAAC
GCCGGCGATG TGGATGTGGC GCCGTTCGTG ATCGTCGCTC CGGTCAAAGC GTTGATGCAG
CCATCGCTGA CGCCCGATGA ACTGCGCGAT GCCAGTGTGC GCCTGGAGCG GGGCATGGCG
TATGCGCTCG ATGATCTGAT CGAACGGTTG ATCGCTATGG GGTATCGGTA CGCGCCGACG
GTCGAGGAGC CGGGCGAAGT CAACCGGCGC GGCGGCATCA TCGATGTGTT TTCGCCGGGG
GATGATCTTC CGCTGCGGAT TGAGTTCTTT GGCGATGAGA TCGATAGTCT GCGGCGGTTC
GATCCGCTGA CGCAGCGCAG CGAGGCGCAG ATCCGCGCTG CGATCATCGG TCCGCCGCAC
GAGTTCCCGC TGTGGCGACG CGATGTTGCG CTGGAACGAA TGCGCGCTAT CGATACGTCG
ATGCTGCGGC ACGAAGCGCT CGATGAGTGG TTGCAGGCGT TCGATCACAT CAGGAATGGG
GAGCGCTTCG AGGGGCGCGC GCTGTTTGCA CCATTCTTCC GCGATAACCC GCAGGCGCCG
GGTACACTGC TGCACCATCT GCCGCCAGGG GCGCCGGTGG TTCTCAGCGA GGCGCTGCTG
CTGGCGCAGC ACGCAACCGA ACTTGATCAG CAGGCGGAAA CGCGCCGCCG TCAGCAGATC
GATGCTGGCG AATTGCCAGC AGCCTTCCCG CGCCCCTATC TCCGCTGGCA CGAACTGATG
GCTCTGGCGG AAGCGCACAC GCTGGTGAAT CTCAGCAACA ACGAACATCC GTTCTGGGAT
GTACTGCTGT CCGATCCTGC ACCGCTTCCA CCATCCTTTT CATTCGGGGA ACAGAACGGC
AATCCTGCGC CATTGACCGA CACCCGCAAC GTACACCCCT CCGAAGACCG CTTCCGGGTT
CATCTCCTGC CAGAACGCCT GTTTGCGCCT GCCGAACTGT TCGGCGGACA GATCCGGCGA
TTGGTTGACG ATGTCGTCGA GCGACTGCGC GCCGGTGAGC GGGTGGTTCT CATCACGCCT
CAGGCGGCGC GGTTGCAGGA ACTCGTCACA GAAGCGTTGC AGCGCGATGC ATCGGATGGT
GTGGAGAACG TTGTATCCGG GTTGACTGTT CTCCACGGTA CGCTTGACGA AGGCTTCCGT
ATGCCAGCGC TCAACCTGAC CCTCTACAGC GACACCGAGA TTTTCGGTTG GCGGCAGCGA
CGCATCATTG CCGATCGTCG CCGTCGCCAT GATCGCCGCG CAGAAGACCG CGCCGCCTTT
CTGCGCGGAT TGAAACCGGG CGATTATGTG GTGCATATCG AGCATGGCAT TGCCGTCTAT
GAAGGATTGA TACGACGAAG CGTCGGCGGC ATCGAGCGCG ACTACCTGAA TCTGCGGTAT
GCCGAAGGCG ACCGGCTCTA CGTGCCGGTC GATCAGATCG ATCGCGTGTC GCGCTACATT
GGCGCGGGCG ATGTCGAACC GCAACTCACC CGCCTGGGCA CGCAGGACTG GGAACGCGCC
AAGCGCAAGG CGCGCGCGGC TGTGCAGGAT CTGGCGGAAG AGTTGATCAC CCTCTATGCG
CAACGTCAAC TGGCGGAGGG GCACGCCTTC AGCCCGGATA CCGAATGGCA ACGCGAACTC
GAAGCCAGTT TCCCCTATGT CGAAACGCCC GACCAGCTCA AAGCGATCAT CGATGTCAAA
CGCGATATGG AGCAGCCGCA ACCGATGGAT CGTCTGGTCT GCGGCGATGT CGGGTTTGGT
AAGACGGAAG TGGCGCTGCG GGCGGCGTTC AAAGCGGTGC AGGACGGTAA ACAGGTGGCA
GTGCTGGCGC CAACCACCGT GCTGGTGCAG CAGCACTACG ACACCTTCAG CCGGCGCATG
GCGGCATTCC CGGTCAGGAT CGATATGATT TCCCGCTTTC GTTCGGCAAA GGAGCAGAGC
GAGATTGTCC AGCGCCTGGC GCGCGGCGAA ATCGACATCA TTATCGGCAC CCACCGTCTG
CTCTCGAAAG ATGTGGTCTT CAAAGACCTG GGACTGCTGG TGATCGACGA GGAGCAGCGC
TTCGGCGTGC GCCACAAAGA GCGTATCAAA CAGTTGCGCA CCAATGTGGA TGTTCTGACC
CTGACGGCAA CGCCGATCCC GCGCACGCTC CACATGGCGC TGGCAGGCAT CCGCGATCTC
AGCATCATCG ATACGCCGCC GGAGGACCGT ATTCCGATCA AAACCTACGT GTTGCCCTAC
GACGAACGCC TGATCCGTGA AGCCATTCTG CGTGAACTCG ACCGCGGCGG ACAGGTCTAC
TTCGTGCACA ATCGGGTGCA GAGCATCTAC TATGTTGCCG ACCGGCTGCG CCGGTTAGTG
CCGGAAGCCC GGATTGCCGT CGGGCACGGG CAACTTGAGG AACATCAACT GGAACGGGTG
ATGCTCGACT TTTTCACCGG CAGAGATGAT GTGCTGGTCT GCACGACGAT CATCGAGAGC
GGATTGGACG TGCCCAACGC CAACACGATT ATCATCGACG ACGCCACCAA TTTTGGTCTG
GCGCAGTTGT ACCAGTTGCG CGGTCGGGTC GGGCGGAGCA CCCAGCGCGC CTATGCATAT
CTATTCTACA AGTCGGAACG TCCTTCGACG CCGGAGGCGC AGGAGCGATT ACGGGCAATT
CAGGAAGCGA CCGAACTCGG CGCAGGGTTC CGTATCGCCA TGCGCGATCT TGAGATTCGC
GGCGCAGGAA ACCTGCTGGG TGCTGAGCAG AGCGGACATA TCGCCGCAGT TGGCTTTGAT
CTCTACTCGC GTCTGCTTGA GCAGGCGGTG CGCACGCTGA AACAGCGGTT GATCGCAACG
AACTTTATCA CCGGCACAGA CGCAATGCGC ACATCCCCAG GCGCGCCAGC GCAACCTTCC
GACGGGCAGA CGCCGCCGCC TGCACGTTCG TCCGTTCCCT CCAGACGACC GGCGGTACGG
GTGGATGAAA AGGTGCTGAT CTCGCCGCTG GTCACGCTCG ATCTCCCGCT CGACGCTTAC
CTGCCGGTCG ATTACATTCC TGATGATCGG GTGCGGCTGG CGGTGTACCA GCGTATGGCG
GAAGCGCAAA CGCCAGAAGC AGTGCGCGAC CTGCGCCAGG AACTGCGTGA CCGGTTCGGA
GAACTGCCAG AGCCAGCAGA TCAACTGCTG ATCTGGTTGC GCATCAAGGC GCTGGCGCTG
GCTGCCGGTG TGACATCGGT CGTCACCACC GATGCCGAGT TTATCATTCG CCTGCCGGAA
GGGAACGATC AGGCGCGATC AAGACTGGAG CGGCGCTTCG CCCGCGCCAG AGGCATACGT
ATCGGACCGC AGTTTGTGCG TCTTGACCGG CGTGTGCATA ACGCAGGCGG CGATCCGGCG
TGGATCGAGG TTATGTGTGA TGTGCTGGCG GTATTGGGGG AAGGGAAGAC GGTTGAAGGT
CAGGGGGTTG AACGTTGA
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| Protein sequence | MSVTTCATVL AEITAIAPVQ DLIATLHAHR GARLHIAPTP GAARTPLVAA FTLQGVAPLL
YLVGTTDAAL RAHEDLRQWI GTDRVFLFPA SDALPYEHMS TGADILTARL RVLHRLAAFN
AGDVDVAPFV IVAPVKALMQ PSLTPDELRD ASVRLERGMA YALDDLIERL IAMGYRYAPT
VEEPGEVNRR GGIIDVFSPG DDLPLRIEFF GDEIDSLRRF DPLTQRSEAQ IRAAIIGPPH
EFPLWRRDVA LERMRAIDTS MLRHEALDEW LQAFDHIRNG ERFEGRALFA PFFRDNPQAP
GTLLHHLPPG APVVLSEALL LAQHATELDQ QAETRRRQQI DAGELPAAFP RPYLRWHELM
ALAEAHTLVN LSNNEHPFWD VLLSDPAPLP PSFSFGEQNG NPAPLTDTRN VHPSEDRFRV
HLLPERLFAP AELFGGQIRR LVDDVVERLR AGERVVLITP QAARLQELVT EALQRDASDG
VENVVSGLTV LHGTLDEGFR MPALNLTLYS DTEIFGWRQR RIIADRRRRH DRRAEDRAAF
LRGLKPGDYV VHIEHGIAVY EGLIRRSVGG IERDYLNLRY AEGDRLYVPV DQIDRVSRYI
GAGDVEPQLT RLGTQDWERA KRKARAAVQD LAEELITLYA QRQLAEGHAF SPDTEWQREL
EASFPYVETP DQLKAIIDVK RDMEQPQPMD RLVCGDVGFG KTEVALRAAF KAVQDGKQVA
VLAPTTVLVQ QHYDTFSRRM AAFPVRIDMI SRFRSAKEQS EIVQRLARGE IDIIIGTHRL
LSKDVVFKDL GLLVIDEEQR FGVRHKERIK QLRTNVDVLT LTATPIPRTL HMALAGIRDL
SIIDTPPEDR IPIKTYVLPY DERLIREAIL RELDRGGQVY FVHNRVQSIY YVADRLRRLV
PEARIAVGHG QLEEHQLERV MLDFFTGRDD VLVCTTIIES GLDVPNANTI IIDDATNFGL
AQLYQLRGRV GRSTQRAYAY LFYKSERPST PEAQERLRAI QEATELGAGF RIAMRDLEIR
GAGNLLGAEQ SGHIAAVGFD LYSRLLEQAV RTLKQRLIAT NFITGTDAMR TSPGAPAQPS
DGQTPPPARS SVPSRRPAVR VDEKVLISPL VTLDLPLDAY LPVDYIPDDR VRLAVYQRMA
EAQTPEAVRD LRQELRDRFG ELPEPADQLL IWLRIKALAL AAGVTSVVTT DAEFIIRLPE
GNDQARSRLE RRFARARGIR IGPQFVRLDR RVHNAGGDPA WIEVMCDVLA VLGEGKTVEG
QGVER
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