| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3440 |
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| Symbol | |
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| ID | 5210417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4318137 |
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| End bp | 4319165 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640597035 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001277748 |
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| Protein GI | 148657543 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.93321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.103466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAAC GAACGCTGGT CATCCTCTGG TCGATCATGG CACTGGCGCT GGCGGCATGT
GGACAGACGA CGCCCGCAGC GCCCACAGCA GCGCCAGGTG CACCTACAGC AGCGCCTGCG
CCCACGCCCG CACCAACTGG CGAGAAACTT CGACTGATTA TTGGCACCGG CGGTACTGGC
GGTGTGTTCT TCCCCTACGG CGGCGGTCTG GCGCGGATTC TTACCGAAAA GATGCCCAAT
ACTGAAGCAA CGGCTCAGGA AACCGGCGGC TCAGTCGATA ACATGAAACT GCTTCAGAGC
AATGAAGCAC AGATCGGCTT TACCACCGCC GACTCAGCGT ATGACGGGAT CAACGGACTG
GCGGCATACC AGGCGACAGG TCCGGTTCCA GCAGCGACGA TTGCCGTCCT CTACCAGAGT
TTCATTCACG TGGTCGCGCG CGCCGACTCG GGCATTACCA GCATTGCCGA TATGAAGGGG
CGCCCCGTAT CGATCGGTTC AGCCGGTAGC AGCACCGAGA CAGCCGCCAT TCGTCTACTG
GAGGCAGCCG GTCTCAAGCC CGAAGATGTC ATCCGCGAGA ACCTCGGCGT CGCCGACTCG
GTGGCAGCCA TGAAGGATAA GAAGATCGAC GCCTTCTTCT GGATTGGCGG TCTGCCAACC
GCAGCAGTCA CCGATCTGGT AACGACCGAG TCCGTCGTGT TTATTGATAC AAGCGCTCTA
TTGAAACCGA TGGTCGATAA GTATGGTCCC ATCTATTCGG CAACTGTGCT GCCGGGCGGG
ACGTACAAAG GAACCGATCA GGATGTGCCC GGTATTGGCG TGGCAAACCT GCTCGTTGTA
CGCGAGGATA TGCCCGCCGA TCAGGTGAAG GGCATCCTGA CGACCATCTT CGACAACCTG
GAGGAAGTGC ATCAGATCCA TCCGGCAGCG CGCACGCTGT CGCTGGAGTC GGCGGTTGAG
GGCTCGTCGA TCCCGTTCCA TTCGGCAGCA ATCGAGTTCT ACAAAGAGCG CGGCGTCTGG
AAAGAGTGA
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| Protein sequence | MLKRTLVILW SIMALALAAC GQTTPAAPTA APGAPTAAPA PTPAPTGEKL RLIIGTGGTG
GVFFPYGGGL ARILTEKMPN TEATAQETGG SVDNMKLLQS NEAQIGFTTA DSAYDGINGL
AAYQATGPVP AATIAVLYQS FIHVVARADS GITSIADMKG RPVSIGSAGS STETAAIRLL
EAAGLKPEDV IRENLGVADS VAAMKDKKID AFFWIGGLPT AAVTDLVTTE SVVFIDTSAL
LKPMVDKYGP IYSATVLPGG TYKGTDQDVP GIGVANLLVV REDMPADQVK GILTTIFDNL
EEVHQIHPAA RTLSLESAVE GSSIPFHSAA IEFYKERGVW KE
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