Gene RoseRS_3213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3213 
Symbol 
ID5210184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4050997 
End bp4052505 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content64% 
IMG OID640596805 
Productmultidrug resistance efflux pump-like protein 
Protein accessionYP_001277524 
Protein GI148657319 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.108943 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCTGGT TCTCGATGAA ACGAACGGTG ATGACAGCGG CAGCGCTTCT GGCGCTGACC 
GCCTGTGGCG GTCAGGCGAC CGCCATCCAG CCCACCCCCA TACCGCCTGT GCGCGCTGAT
GAGCGCGTGG TCGCCGAAGC CCGCGTTGTG CCGGCACGCA GCGCTGCGCT GGCGATGAAT
AGCAGCGGCG TGGTGGCGGA CGTGCTTGTA TCAGAAGGCG ACACAGTTCA GGCGCAACAG
GTGCTGCTCG TGCTCGACAC CCGACGACAA GAGGCAATCG TTGCACAGGC GGCAGCCGAT
AAGGCGCGCG CCGAAGCGAC ACTGGCGCGT CTGAAAGCAG GACCGACCGA AGAGGAGATT
GTCGCTGCCG AAGCGCAGGT GCAGCGTGCC GAAGCACAAT TGCAGCAGGT GCGCGGCAAT
GTCACCGACC GCGACATCCT TGCCGCCGAA GCCCGTCTCC AGCAGGCGCG TGCGCGCCTT
GCAGAACTTG AGCGCGCCAG CAACCGCCCC GAAGTCGTTC AGGCAGGCGC ACGCCTGGAA
GAAGCACGCG CCACGCTCGA AGCCGAAAAA GCGCGTCTCT CCGCCGCCAA GACCGATGCC
CGTCTGCGGA TGGAACAGGC TGTCGAAGCG CTCACCCGCG CTCAATCAGC GTGGGTCGTC
GCAAAAAATG AGTGGGATAG CGTACAGGCC GACGGTCAAC ACCCGACGCT CGGTTATGGA
TTGAACGAAG CTGAGAAGCG CAAATTCTAC GATGCGTTCG TTCAGGCGGA AACAGCGCTG
CGGAGCGCCG AAAGCAGCCT GGAACAGGCG CGCATCGCAT ACGACGCCGC GCGTCAGGCG
GAAGCGGCGG GCGTCAGCGC CGCCGGGCAG CGCGTCGTCG AGGCGCAGGC GGCGTATGAC
CGCATTGTCC GCAGCACAAA CAACGATGAA CTCGCTGCGG CGCGCGCTGA AGTCGCCGAT
GCCCAGGCGC GCCTGGAGAG ACTCCGTGGC GAAGAACGCG CCGGCGCCAT CGCCGTCGCC
GAAGCGACGC TGGCGGAAGC CCGCGCCAAC CTGGCACGGT TGAAAGCCGG TCCTACTGCT
GCGCAGATCG CCGAAGCAGA GGCCGATGTA CGCCGCGCCA CTGCCGCGCT CCAGGCGGCA
CAGACACAAC TCGATGAATT GACCCTGCGC GCGCCATTCG GTGGTCTGAT TGCTGCGGTC
AATATCAAAC CGGGCGAGTA TGTCACCCCT GGCACACCAT TGATTACCAT CGGCGATCCC
GGCGCCTGGC AGATCGAAAC AACCGACCTG ACCGAACTCA GCATCGTCAA AGTGCAACCT
GATGCACCGG TCACGATCAC TTTCGATGCA CTGCCCGGCC TCGAAATGCA GGGGCGCGTC
ACACGGATCC GTGAACTCGG CGAGAACCGC CAGGGCGACA TTACCTACCG CGTCATCATC
ACCCCGGCGC AACACAACCC TCGCCTGCGC TGGAATATGA CCGCTTCGGT TGCGATCGGT
CAACCGTAA
 
Protein sequence
MFWFSMKRTV MTAAALLALT ACGGQATAIQ PTPIPPVRAD ERVVAEARVV PARSAALAMN 
SSGVVADVLV SEGDTVQAQQ VLLVLDTRRQ EAIVAQAAAD KARAEATLAR LKAGPTEEEI
VAAEAQVQRA EAQLQQVRGN VTDRDILAAE ARLQQARARL AELERASNRP EVVQAGARLE
EARATLEAEK ARLSAAKTDA RLRMEQAVEA LTRAQSAWVV AKNEWDSVQA DGQHPTLGYG
LNEAEKRKFY DAFVQAETAL RSAESSLEQA RIAYDAARQA EAAGVSAAGQ RVVEAQAAYD
RIVRSTNNDE LAAARAEVAD AQARLERLRG EERAGAIAVA EATLAEARAN LARLKAGPTA
AQIAEAEADV RRATAALQAA QTQLDELTLR APFGGLIAAV NIKPGEYVTP GTPLITIGDP
GAWQIETTDL TELSIVKVQP DAPVTITFDA LPGLEMQGRV TRIRELGENR QGDITYRVII
TPAQHNPRLR WNMTASVAIG QP